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Problems using reconstructPar on a case involving AMI |
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March 27, 2016, 06:57 |
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#21 | |
Senior Member
Joern Beilke
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Quote:
I used the ERCOFTAC tutorial from twcoPhaseMixingCentralFoam. It uses the libCompressiblrTools Library from the same server. Jörn |
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March 27, 2016, 09:35 |
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#22 | |
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Bruno Santos
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Hi Jörn,
Quote:
Best regards, Bruno |
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March 27, 2016, 16:18 |
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#23 |
Senior Member
Joern Beilke
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No. The reconstruction only works, when the library is missing or the call is removed from controlDict. It is the same problem like it was reported with swak.
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May 30, 2016, 05:51 |
same problem
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#24 |
New Member
Join Date: May 2016
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is this problem solved yet. I can not use cyclicAMI without getting the error message:
Unable to find initial target face It occurs even with a simple meshed cube with two sides of cyclicAMI. Please help! |
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June 23, 2016, 03:27 |
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#25 |
New Member
Justin Wiegmann
Join Date: Aug 2015
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Hi!
I had the same problem with reconstructPar in OpenFOAM 2.4.0. The problem was with a *.lib in controlDict, which I had to use to define a porousBafflePressure BC. After deleting it and redefining the BC it worked. Maybe this helps other Foamers. Regards JW |
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August 20, 2016, 10:17 |
unable to find initial target face
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#26 |
New Member
majid
Join Date: Oct 2015
Location: Iran,Tehran
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Hi every body
I simulated a circular channel in blockMesh and want to solve it with sonicFoam but it give me the following error: unable to find initial target face I used two pair of cyclicAMI Bc's and I attached the picture of my geometry. |
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August 23, 2016, 06:23 |
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#27 |
New Member
James Bridgwater Court
Join Date: Jan 2016
Posts: 14
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Hi everyone,
I seem to be experiencing the same issue on OF3.0.1 (full build 3.0.1-d8a290b55d28) - I'm developing a numerical wave tank using the olaFoam toolbox and a transverse AMI cylinder to deal with wave energy device motion. I hadn't been experiencing this issue until I changed my createPatchDict to explicitly state the transform for setup of the AMI patches (see the updated createPatchDict below): Code:
// Do a synchronisation of coupled points after creation of any patches. // Note: this does not work with points that are on multiple coupled patches // with transformations (i.e. cyclics). pointSync false; // Patches to create. patches ( { //- Master side patch name AMI1; patchInfo { type cyclicAMI; matchTolerance 0.0001; neighbourPatch AMI2; transform rotational; rotationAxis (0 1 0); rotationCentre (0 0 $hingeDepth); } constructFrom patches; patches (AMICylinder); } { //- Slave side patch name AMI2; patchInfo { type cyclicAMI; matchTolerance 0.0001; neighbourPatch AMI1; transform rotational; rotationAxis (0 1 0); rotationCentre (0 0 $hingeDepth); } constructFrom patches; patches (AMICylinder_slave); } Anyway, previously I'd set transform to noOrdering as it is in the propeller tutorial and had been experiencing issues whenever I tried to run the simulation to solve for device motion due to wave-structure interaction (another issue which I've started a separate thread for http://www.cfd-online.com/Forums/ope...mi-motion.html), so was trying different things in an attempt to get the thing to run. Back to the matter in hand, I'm going to try editing my Allrun script to comment out the olaFoam libraries in controlDict just while setFields - which is where the problem starts - is running and then bring it back for decomposePar and the solver. I'll update with how I get on (I'm a bit of a novice in bash, so it might take me a while!). The output from log.setFields is below, just for reference. Code:
Create time Create mesh for time = 0 Reading setFieldsDict Setting field default values Setting internal values of volScalarField alpha.water AMI: Creating addressing and weights between 33904 source faces and 34112 target faces --> FOAM Warning : From function AMIMethod<SourcePatch, TargetPatch>::checkPatches() in file lnInclude/AMIMethod.C at line 57 Source and target patch bounding boxes are not similar source box span : (5.20002 2.499 2.92903) target box span : (4.58053 2.499 4.72778) source box : (-2.60001 0 -1.8) (2.60001 2.499 1.12903) target box : (-2.59996 0 -3.59879) (1.98057 2.499 1.12899) inflated target box : (-2.95202 -0.352059 -3.95085) (2.33263 2.85106 1.48105) --> FOAM FATAL ERROR: Unable to set source and target faces From function void Foam::faceAreaWeightAMI<SourcePatch, TargetPatch>::setNextFaces(label&, label&, label&, const boolList&, labelList&, const DynamicList<label>&, bool) const in file lnInclude/faceAreaWeightAMI.C at line 300. FOAM aborting #0 Foam::error::printStack(Foam::Ostream&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libOpenFOAM.so" #1 Foam::error::abort() in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libOpenFOAM.so" #2 Foam::faceAreaWeightAMI<Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> >, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > >::calcAddressing(Foam::List<Foam::DynamicList<long, 0u, 2u, 1u> >&, Foam::List<Foam::DynamicList<double, 0u, 2u, 1u> >&, Foam::List<Foam::DynamicList<long, 0u, 2u, 1u> >&, Foam::List<Foam::DynamicList<double, 0u, 2u, 1u> >&, long, long) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #3 Foam::faceAreaWeightAMI<Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> >, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > >::calculate(Foam::List<Foam::List<long> >&, Foam::List<Foam::List<double> >&, Foam::List<Foam::List<long> >&, Foam::List<Foam::List<double> >&, long, long) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #4 Foam::AMIInterpolation<Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> >, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > >::update(Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > const&, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #5 Foam::AMIInterpolation<Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> >, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > >::constructFromSurface(Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > const&, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > const&, Foam::autoPtr<Foam::searchableSurface> const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #6 Foam::cyclicAMIPolyPatch::resetAMI(Foam::AMIInterpolation<Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> >, Foam::PrimitivePatch<Foam::face, Foam::SubList, Foam::Field<Foam::Vector<double> > const&, Foam::Vector<double> > >::interpolationMethod const&) const in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #7 Foam::cyclicAMIPolyPatch::AMI() const in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #8 Foam::cyclicAMIPolyPatch::applyLowWeightCorrection() const in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libmeshTools.so" #9 Foam::cyclicAMIFvPatchField<double>::patchNeighbourField() const in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libfiniteVolume.so" #10 Foam::coupledFvPatchField<double>::evaluate(Foam::UPstream::commsTypes) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libfiniteVolume.so" #11 Foam::cyclicAMIFvPatchField<double>::cyclicAMIFvPatchField(Foam::fvPatch const&, Foam::DimensionedField<double, Foam::volMesh> const&, Foam::dictionary const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libfiniteVolume.so" #12 Foam::fvPatchField<double>::adddictionaryConstructorToTable<Foam::cyclicAMIFvPatchField<double> >::New(Foam::fvPatch const&, Foam::DimensionedField<double, Foam::volMesh> const&, Foam::dictionary const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/lib/libfiniteVolume.so" #13 Foam::fvPatchField<double>::New(Foam::fvPatch const&, Foam::DimensionedField<double, Foam::volMesh> const&, Foam::dictionary const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #14 Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::readField(Foam::DimensionedField<double, Foam::volMesh> const&, Foam::dictionary const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #15 Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>::readFields(Foam::dictionary const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #16 Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>::readFields() in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #17 Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>::GeometricField(Foam::IOobject const&, Foam::fvMesh const&) in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #18 ? in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #19 ? in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #20 ? in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #21 ? in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" #22 __libc_start_main in "/lib64/libc.so.6" #23 ? in "/apps/openfoam/gcc/3.0.1/OpenFOAM-3.0.1/platforms/linux64GccDPInt64Opt/bin/setFields" |
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August 23, 2016, 07:11 |
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#28 |
Member
Pekka Pasanen
Join Date: Feb 2012
Location: Finland
Posts: 87
Rep Power: 14 |
--snip--
Code:
Create time Create mesh for time = 0 Reading setFieldsDict Setting field default values Setting internal values of volScalarField alpha.water AMI: Creating addressing and weights between 33904 source faces and 34112 target faces --> FOAM Warning : From function AMIMethod<SourcePatch, TargetPatch>::checkPatches() in file lnInclude/AMIMethod.C at line 57 Source and target patch bounding boxes are not similar source box span : (5.20002 2.499 2.92903) target box span : (4.58053 2.499 4.72778) source box : (-2.60001 0 -1.8) (2.60001 2.499 1.12903) target box : (-2.59996 0 -3.59879) (1.98057 2.499 1.12899) inflated target box : (-2.95202 -0.352059 -3.95085) (2.33263 2.85106 1.48105) --> FOAM FATAL ERROR: Unable to set source and target faces You have a geometrical problem with your AMI patches. As you can see, AMI is telling you that the target and source patches do not match (size is different in X and Z co-ordinates). Check your geometrical patch assingments, as for AMI the patches have to match geometrically exactly (or at least very very closely). Maybe you should try specifying also rotationAngle? Check this: http://openfoam.org/release/2-3-0/non-conforming-ami/. Documentation or examples are pretty hard to find for how to use rotationAngle, I strugled with a similar issue myself some time ago. |
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August 23, 2016, 12:32 |
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#29 |
New Member
James Bridgwater Court
Join Date: Jan 2016
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Thanks Pekka, that link does mention the rotationCentre and rotationAxis keywords that I'm unsure about - I generate the patches that are neighbours for my AMI cylinder (i.e. AMI1 and AMI2) from a user-defined cylinder in snappyHexMesh - AMICylinder - from which another patch, AMICylinder_slave is derived. This pair are then used as the two AMI patches, so they should conform perfectly to one-another.
I've successfully (I think, as the solver log file seemed sensible - but I'm still transferring over from the supercomputer to check the results) run this with prescribed motion for the AMI cylinder: the only difference being that I'd set the transform to noOrdering. I'd been running my case with calculated motion (sixDoFRigidBodyMotion solver) and with the transform set to noOrdering too, and only getting errors once the solver had run to about 0.02s - so the meshing was fine with that. This setFields error has only arisen since I changed the transform setting in createPatchDict - but there must have been something wrong with the way I'd implemented my AMI before for the solver not to be able to run the simulation to completion. I think therefore that the issue here could lie in how I've set the rotationCentre and rotationAxis parameters. Either that or it's the bug mentioned earlier in the thread that leads to this same error. Thanks again, James |
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August 24, 2016, 05:38 |
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#30 |
New Member
James Bridgwater Court
Join Date: Jan 2016
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To be honest I'm a little unclear as to what rotationAngle does. I've had a quick grep through the tutorials that come with OF3.0.1 and I can't see it used anywhere - I definitely agree it's hard to find documentation for it!
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August 24, 2016, 05:58 |
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#31 |
New Member
majid
Join Date: Oct 2015
Location: Iran,Tehran
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Hi Pekka
my patch was rotated so it's bounding box is different in all direction. the dx and dy of my and area of my patches is equal but I have error ani I cant resolve it. |
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August 24, 2016, 06:54 |
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#32 | |
New Member
James Bridgwater Court
Join Date: Jan 2016
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Quote:
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June 26, 2017, 21:33 |
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#33 | |
Member
Sugajen
Join Date: Jan 2012
Location: Tempe, USA
Posts: 52
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Quote:
I am facing a similar error "unable to find initial target face" using cyclicAMI on snappyHexMesh. I have refined my mesh multiple times but that does not help. @Dhruv were you able sort out your issue ? |
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June 27, 2017, 12:28 |
unable to find initial target face
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#34 | |
Member
Hooman
Join Date: Apr 2011
Posts: 35
Rep Power: 15 |
Quote:
I read pretty much everything in this forum on this issue but have not found any solid solution. I have a simple geometry and would like to assign cyclicAMI after meshing with SHM. First I got the error "Unable to set source and target faces " and managed to solve it by refining my surface mesh on these two cyclic BCs. Now I am getting "unable to find initial target face" and have no clue how to resolve it. Do you guys have any hint on that? There are just two sides of a box and have the exact same geometry . |
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August 28, 2017, 10:57 |
Cyclic B.C. reconstractPar Problem
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#35 |
New Member
Hakan Baran
Join Date: Apr 2017
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I have the same problem. The all day I was trying to solve where this problem comes from. And unfortunately I could not find. So my case is;
1-Flow in a channel 2-Using PimpleDyMFoam 3-There is a rotating disc inside of channel and I am using cyclicAMI 4-The inlet and outlet of channel are cyclic The decomposePar is running and the simulation also. But when I reconstruct the processors, I am geting below error; [QUOTE] Reconstructing FV fields Reconstructing volScalarFields p AMI: Creating addressing and weights between 2224 source faces and 1364 target faces --> FOAM FATAL ERROR: Unable to set source and target faces [QUOTE] Below solutions was already tried and could not fix: 1-change decomposeParDict from hierarchical to simple. So it is not related with the method of decomposition. 2-use preservePatch in order to put the cyclic boundaries in to one processors. But it gave me the same problem. 3-I am using HPC and I need at least 160 processors. So I deacreased the number of processors from (1 1 160) to (1 1 4) -> okay (1 1 40) -> okay (1 2 40) -> reconstractPar is not running (1 2 40) -> reconstractPar is not running (2 1 40) -> okay (1 1 80) -> reconstractPar is not running (2 1 60) -> reconstractPar is not running So it changes according to number of processors obviously but how??? 4-I changed the cyclic boundary condition to normal boundary condition with keeping number of processors same as (1 1 160) and reconstructPar works without any error. So it means also that it depends on the cyclic boundary condition. 5- change the OpenFOAM version. I used 2.3 , 4 and 5 and all of them are the same. So it is not version dependant. 6-I used another computer and same problem. So how it is possible that reconstractPar depends on both cyclic B.C. and number of processors. Even I used the preservePatch, it means that it should not be related with cyclic B.C. Any ideas??? |
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December 15, 2017, 12:25 |
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#36 | |
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Bashar
Join Date: Jul 2015
Posts: 74
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[QUOTE=akin1078;662166]I have the same problem. The all day I was trying to solve where this problem comes from. And unfortunately I could not find. So my case is;
1-Flow in a channel 2-Using PimpleDyMFoam 3-There is a rotating disc inside of channel and I am using cyclicAMI 4-The inlet and outlet of channel are cyclic The decomposePar is running and the simulation also. But when I reconstruct the processors, I am geting below error; [QUOTE] Reconstructing FV fields Reconstructing volScalarFields p AMI: Creating addressing and weights between 2224 source faces and 1364 target faces --> FOAM FATAL ERROR: Unable to set source and target faces Quote:
Any chance that you solve this issues? I am facing exactly the same issue when working with AMI! Bashar |
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February 26, 2019, 06:09 |
Problem when using cyclicAMI
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#37 |
New Member
Duc Anh
Join Date: Dec 2018
Posts: 22
Rep Power: 7 |
Hi all,
l created a turbine mesh in turborGrid and imported it to OF 6.0, checkMesh is Ok, but when l run PimpleFoam I am facing a similar error : Code:
AMI: Creating addressing and weights between 6625 source faces and 6625 target faces --> FOAM Warning : From function void Foam::AMIMethod<SourcePatch, TargetPatch>::checkPatches() const [with SourcePatch = Foam::PrimitivePatch<Foam::face, Foam::SubList, const Foam::Field<Foam::Vector<double> >&>; TargetPatch = Foam::PrimitivePatch<Foam::face, Foam::SubList, const Foam::Field<Foam::Vector<double> >&>] in file lnInclude/AMIMethod.C at line 57 Source and target patch bounding boxes are not similar source box span : (0.041425 0.0215107 0.096) target box span : (0.0419304 0.0195127 0.096) source box : (0.0874741 0.04003 -0.016) (0.128899 0.0615407 0.08) target box : (0.0897394 0.035125 -0.016) (0.13167 0.0546376 0.08) inflated target box : (0.0844115 0.029797 -0.0213279) (0.136998 0.0599656 0.085328) --> FOAM FATAL ERROR: Unable to set source and target faces Please have a look at my geometry in the attached images. My boundaries is like below: Code:
12 ( outlet { type patch; nFaces 6360; startFace 4074577; } movingWalls { type wall; inGroups 1(wall); nFaces 40680; startFace 4080937; } rotorBlade { type wall; inGroups 1(wall); nFaces 33231; startFace 4121617; } statorBlade { type wall; inGroups 1(wall); nFaces 6976; startFace 4154848; } inlet { type patch; nFaces 1280; startFace 4161824; } stationnaryWalls { type wall; inGroups 1(wall); nFaces 18920; startFace 4163104; } cyclicRepeatAMIInterface1 { type cyclicRepeatAMI; inGroups 1(RepeatAMI1); nFaces 1792; startFace 4182024; inGroups 1 ( RepeatAMI1 ); name cyclicRepeatAMIInterface1; neighbourPatch cyclicRepeatAMIInterface2; transformPatch cyclic_Out1; } cyclicRepeatAMIInterface2 { type cyclicRepeatAMI; inGroups 1(RepeatAMI2); nFaces 5565; startFace 4183816; inGroups 1 ( RepeatAMI2 ); name cyclicRepeatAMIInterface2; neighbourPatch cyclicRepeatAMIInterface1; transformPatch cyclic_Out1; } cyclic_In1 { type cyclicAMI; inGroups 1(cyclicAMI); nFaces 3616; startFace 4189381; matchTolerance 0.0001; transform rotational; neighbourPatch cyclic_In2; rotationAxis (0 0 1); rotationCentre (0 0 0); } cyclic_In2 { type cyclicAMI; inGroups 1(cyclicAMI); nFaces 3616; startFace 4192997; matchTolerance 0.0001; transform rotational; neighbourPatch cyclic_In1; rotationAxis (0 0 1); rotationCentre (0 0 0); } cyclic_Out1 { type cyclicAMI; inGroups 1(cyclicAMI); nFaces 6625; startFace 4196613; matchTolerance 0.0001; transform rotational; neighbourPatch cyclic_Out2; rotationAxis (0 0 1); rotationCentre (0 0 0); } cyclic_Out2 { type cyclicAMI; inGroups 1(cyclicAMI); nFaces 6625; startFace 4203238; matchTolerance 0.0001; transform rotational; neighbourPatch cyclic_Out1; rotationAxis (0 0 1); rotationCentre (0 0 0); } ) Could any body help me on this problems? 1.png 2.png 3.png |
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May 26, 2019, 08:26 |
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#38 | |
New Member
homayoun askarpour
Join Date: May 2019
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Quote:
How can I fix this problem? |
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September 30, 2020, 06:36 |
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#39 |
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Javier Vinuales
Join Date: May 2016
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Rep Power: 9 |
edit: reply on wrong post
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