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Old   November 5, 2013, 09:42
Default floating object
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Dear OpenFOAM users,

can you help me please to solve the error that I got when run
run/tutorials/multiphase/interDyMFoam/ras/floatingObject
blockMesh was fine, but when I run interDyMFoam, it gives me the following error
++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++
maimouna@maimouna-desktop:~/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject$ interDyMFoam
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.2.1 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.2.1-57f3c3617a2d
Exec : interDyMFoam
Date : Nov 05 2013
Time : 13:16:34
Host : "maimouna-desktop"
PID : 3096
Case : /home/maimouna/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Duplicate entry alphatJayatillekeWallFunction in runtime selection table fvPatchField
#0 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam5error14safePrintStackERSo+ 0x25) [0x7f43ed0633b5]
#1 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so(+0x8f3f9) [0x7f43e5e9c3f9]
#2 /lib64/ld-linux-x86-64.so.2(+0xf306) [0x7f43f1455306]
#3 /lib64/ld-linux-x86-64.so.2(+0xf3df) [0x7f43f14553df]
#4 /lib64/ld-linux-x86-64.so.2(+0x13ada) [0x7f43f1459ada]
#5 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f43f1455176]
#6 /lib64/ld-linux-x86-64.so.2(+0x1331a) [0x7f43f145931a]
#7 /lib/x86_64-linux-gnu/libdl.so.2(+0xf26) [0x7f43ec8f6f26]
#8 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f43f1455176]
#9 /lib/x86_64-linux-gnu/libdl.so.2(+0x152f) [0x7f43ec8f752f]
#10 /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f43ec8f6fc1]
#11 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam6dlOpenERKNS_8fileNameEb+0x 45) [0x7f43ed05c405]
#12 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 8fileNameEb+0x63) [0x7f43ecdc4233]
#13 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 10dictionaryERKNS_4wordE+0x9d) [0x7f43ecdc54fd]
#14 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam4TimeC1ERKNS_4wordERKNS_7ar gListES3_S3_+0x63a) [0x7f43ecde301a]
#15 interDyMFoam() [0x422bbf]
#16 /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f43ebd4676d]
#17 interDyMFoam() [0x42db5d]
Duplicate entry alphatJayatillekeWallFunction in runtime selection table fvPatchField
#0 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam5error14safePrintStackERSo+ 0x25) [0x7f43ed0633b5]
#1 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so(+0x8f4a1) [0x7f43e5e9c4a1]
#2 /lib64/ld-linux-x86-64.so.2(+0xf306) [0x7f43f1455306]
#3 /lib64/ld-linux-x86-64.so.2(+0xf3df) [0x7f43f14553df]
#4 /lib64/ld-linux-x86-64.so.2(+0x13ada) [0x7f43f1459ada]
#5 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f43f1455176]
#6 /lib64/ld-linux-x86-64.so.2(+0x1331a) [0x7f43f145931a]
#7 /lib/x86_64-linux-gnu/libdl.so.2(+0xf26) [0x7f43ec8f6f26]
#8 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f43f1455176]
#9 /lib/x86_64-linux-gnu/libdl.so.2(+0x152f) [0x7f43ec8f752f]
#10 /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f43ec8f6fc1]
#11 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam6dlOpenERKNS_8fileNameEb+0x 45) [0x7f43ed05c405]
#12 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 8fileNameEb+0x63) [0x7f43ecdc4233]
#13 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 10dictionaryERKNS_4wordE+0x9d) [0x7f43ecdc54fd]
#14 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam4TimeC1ERKNS_4wordERKNS_7ar gListES3_S3_+0x63a) [0x7f43ecde301a]
#15 interDyMFoam() [0x422bbf]
#16 /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f43ebd4676d]
#17 interDyMFoam() [0x42db5d]
Duplicate entry alphatJayatillekeWallFunction in runtime selection table fvPatchField
#0 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam5error14safePrintStackERSo+ 0x25) [0x7f43ed0633b5]
#1 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so(+0x8f44d) [0x7f43e5e9c44d]
#2 /lib64/ld-linux-x86-64.so.2(+0xf306) [0x7f43f1455306]
#3 /lib64/ld-linux-x86-64.so.2(+0xf3df) [0x7f43f14553df]
#4 /lib64/ld-linux-x86-64.so.2(+0x13ada) [0x7f43f1459ada]
#5 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f43f1455176]
#6 /lib64/ld-linux-x86-64.so.2(+0x1331a) [0x7f43f145931a]
#7 /lib/x86_64-linux-gnu/libdl.so.2(+0xf26) [0x7f43ec8f6f26]
#8 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f43f1455176]
#9 /lib/x86_64-linux-gnu/libdl.so.2(+0x152f) [0x7f43ec8f752f]
#10 /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f43ec8f6fc1]
#11 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam6dlOpenERKNS_8fileNameEb+0x 45) [0x7f43ed05c405]
#12 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 8fileNameEb+0x63) [0x7f43ecdc4233]
#13 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 10dictionaryERKNS_4wordE+0x9d) [0x7f43ecdc54fd]
#14 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam4TimeC1ERKNS_4wordERKNS_7ar gListES3_S3_+0x63a) [0x7f43ecde301a]
#15 interDyMFoam() [0x422bbf]
#16 /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f43ebd4676d]
#17 interDyMFoam() [0x42db5d]
Create mesh for time = 0

Selecting dynamicFvMesh dynamicMotionSolverFvMesh
Selecting motion solver: displacementLaplacian


--> FOAM FATAL IO ERROR:
cannot find file

file: /home/maimouna/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject/0/pointDisplacement at line 0.

From function regIOobject::readStream()
in file db/regIOobject/regIOobjectRead.C at line 73.

FOAM exiting

maimouna@maimouna-desktop:~/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject$
++++++++++++++++++++++++++++++++++++++++++++++++++ +++++++++++++
What this means? How solve it?

Thanks a lot for your helping.
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Old   November 6, 2013, 11:36
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If you open the Allrun file, you discover that after "blockMesh" you have to give some topoSet commands, befor running the simulation.

Have you done this?
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Old   November 6, 2013, 11:44
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Dear Samuele,

I didn't do it. How can I do it please?
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Old   November 6, 2013, 12:28
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Simply open the Allrun file in the case dir and copy the command in your terminal.
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Old   November 7, 2013, 05:47
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Dear Samuele,

I have this Allrun file in my case
************************************************** **************************************************
#!/bin/sh
cd ${0%/*} || exit 1 # run from this directory

# Source tutorial run functions
. $WM_PROJECT_DIR/bin/tools/RunFunctions

# Set application name
application=`getApplication`

runApplication blockMesh
runApplication topoSet
runApplication subsetMesh -overwrite c0 -patch floatingObject
cp -r 0.org 0 > /dev/null 2>&1
runApplication setFields
runApplication $application

# ----------------------------------------------------------------- end-of-file
************************************************** *************************************************
What command I have to copy?

I tried, and all log files are there but the same error comes again.
What's the problem?
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Old   November 7, 2013, 06:01
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Hi.

Well, you can either run the command ./Allrun in the case dir, or giving all the commands, one after the other. In your case:

blockMesh
topoSet
subsetMesh -overwrite c0 -patch floatingObject
cp -r 0.org 0 > /dev/null 2>&1
setFields
interDyMFoam
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Old   November 7, 2013, 06:41
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Hi dear,

sorry for disturbing you many times, but when run this command
subsetMesh -overwrite c0 -patch floatingObject
gives me the following error,
************************************************** ************************************************** **************
maimouna@maimouna-desktop:~/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject$ subsetMesh -overwrite c0 -patch floatingObject
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.2.1 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.2.1-57f3c3617a2d
Exec : subsetMesh -overwrite c0 -patch floatingObject
Date : Nov 07 2013
Time : 10:32:33
Host : "maimouna-desktop"
PID : 3736
Case : /home/maimouna/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

Duplicate entry alphatJayatillekeWallFunction in runtime selection table fvPatchField
#0 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam5error14safePrintStackERSo+ 0x25) [0x7f8b6d3b53b5]
#1 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so(+0x8f3f9) [0x7f8b67ca23f9]
#2 /lib64/ld-linux-x86-64.so.2(+0xf306) [0x7f8b6f801306]
#3 /lib64/ld-linux-x86-64.so.2(+0xf3df) [0x7f8b6f8013df]
#4 /lib64/ld-linux-x86-64.so.2(+0x13ada) [0x7f8b6f805ada]
#5 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f8b6f801176]
#6 /lib64/ld-linux-x86-64.so.2(+0x1331a) [0x7f8b6f80531a]
#7 /lib/x86_64-linux-gnu/libdl.so.2(+0xf26) [0x7f8b6cc48f26]
#8 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f8b6f801176]
#9 /lib/x86_64-linux-gnu/libdl.so.2(+0x152f) [0x7f8b6cc4952f]
#10 /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f8b6cc48fc1]
#11 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam6dlOpenERKNS_8fileNameEb+0x 45) [0x7f8b6d3ae405]
#12 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 8fileNameEb+0x63) [0x7f8b6d116233]
#13 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 10dictionaryERKNS_4wordE+0x9d) [0x7f8b6d1174fd]
#14 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam4TimeC1ERKNS_4wordERKNS_7ar gListES3_S3_+0x63a) [0x7f8b6d13501a]
#15 subsetMesh() [0x439d99]
#16 /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f8b6c09876d]
#17 subsetMesh() [0x43c9cd]
Duplicate entry alphatJayatillekeWallFunction in runtime selection table fvPatchField
#0 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam5error14safePrintStackERSo+ 0x25) [0x7f8b6d3b53b5]
#1 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so(+0x8f4a1) [0x7f8b67ca24a1]
#2 /lib64/ld-linux-x86-64.so.2(+0xf306) [0x7f8b6f801306]
#3 /lib64/ld-linux-x86-64.so.2(+0xf3df) [0x7f8b6f8013df]
#4 /lib64/ld-linux-x86-64.so.2(+0x13ada) [0x7f8b6f805ada]
#5 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f8b6f801176]
#6 /lib64/ld-linux-x86-64.so.2(+0x1331a) [0x7f8b6f80531a]
#7 /lib/x86_64-linux-gnu/libdl.so.2(+0xf26) [0x7f8b6cc48f26]
#8 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f8b6f801176]
#9 /lib/x86_64-linux-gnu/libdl.so.2(+0x152f) [0x7f8b6cc4952f]
#10 /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f8b6cc48fc1]
#11 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam6dlOpenERKNS_8fileNameEb+0x 45) [0x7f8b6d3ae405]
#12 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 8fileNameEb+0x63) [0x7f8b6d116233]
#13 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 10dictionaryERKNS_4wordE+0x9d) [0x7f8b6d1174fd]
#14 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam4TimeC1ERKNS_4wordERKNS_7ar gListES3_S3_+0x63a) [0x7f8b6d13501a]
#15 subsetMesh() [0x439d99]
#16 /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f8b6c09876d]
#17 subsetMesh() [0x43c9cd]
Duplicate entry alphatJayatillekeWallFunction in runtime selection table fvPatchField
#0 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam5error14safePrintStackERSo+ 0x25) [0x7f8b6d3b53b5]
#1 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libcompressibleRASModels.so(+0x8f44d) [0x7f8b67ca244d]
#2 /lib64/ld-linux-x86-64.so.2(+0xf306) [0x7f8b6f801306]
#3 /lib64/ld-linux-x86-64.so.2(+0xf3df) [0x7f8b6f8013df]
#4 /lib64/ld-linux-x86-64.so.2(+0x13ada) [0x7f8b6f805ada]
#5 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f8b6f801176]
#6 /lib64/ld-linux-x86-64.so.2(+0x1331a) [0x7f8b6f80531a]
#7 /lib/x86_64-linux-gnu/libdl.so.2(+0xf26) [0x7f8b6cc48f26]
#8 /lib64/ld-linux-x86-64.so.2(+0xf176) [0x7f8b6f801176]
#9 /lib/x86_64-linux-gnu/libdl.so.2(+0x152f) [0x7f8b6cc4952f]
#10 /lib/x86_64-linux-gnu/libdl.so.2(dlopen+0x31) [0x7f8b6cc48fc1]
#11 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam6dlOpenERKNS_8fileNameEb+0x 45) [0x7f8b6d3ae405]
#12 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 8fileNameEb+0x63) [0x7f8b6d116233]
#13 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam14dlLibraryTable4openERKNS_ 10dictionaryERKNS_4wordE+0x9d) [0x7f8b6d1174fd]
#14 /opt/openfoam221/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam4TimeC1ERKNS_4wordERKNS_7ar gListES3_S3_+0x63a) [0x7f8b6d13501a]
#15 subsetMesh() [0x439d99]
#16 /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed) [0x7f8b6c09876d]
#17 subsetMesh() [0x43c9cd]
Create mesh for time = 0

Reading cell set from c0

Adding exposed internal faces to patch floatingObject

Subsetting field nut
Subsetting field k
Subsetting field p_rgh
Subsetting field alpha1


--> FOAM FATAL IO ERROR:
size 94848 is not equal to the given value of 96000

file: /home/maimouna/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject/0/alpha1 from line 18 to line 94888.

From function Field<Type>::Field(const word& keyword, const dictionary&, const label)
in file /home/opencfd/OpenFOAM/OpenFOAM-2.2.1/src/OpenFOAM/lnInclude/Field.C at line 236.

FOAM exiting

maimouna@maimouna-desktop:~/OpenFOAM/maimouna-2.2.1/run/tutorials/multiphase/interDyMFoam/ras/floatingObject$
************************************************** ************************************************** ******************
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Old   November 7, 2013, 07:12
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Samuele Z
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I am running it and it works, for me.

So, I suggest you to enter the case and give the command
Code:
./Allclean
and then
Code:
./Allrun
.

Do you still have the error?
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Old   November 7, 2013, 08:35
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It still running. Many thanks.

If any problem, I will let you know.

Best regards
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Old   November 7, 2013, 08:50
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Ok.

Good luck,
Samuele
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Old   November 7, 2013, 08:58
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Unfortunately, it still gives me error when I interDyMFoam.

I followed all steps.
./Allclean
./Allrun
blockMesh
topoSet
subsetMesh -overwrite c0 -patch floatingObject ( the problem starts here)
cp -r 0.org 0 > /dev/null 2>&1
setFields
interDyMFoam

What can I do then?
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Old   November 7, 2013, 11:24
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When I applied ./Allrun all time step was fine, but find problem with paraFoam?

After ./Allrun, shall I need to apply:
blockMesh
topoSet
subsetMesh -overwrite c0 -patch floatingObject ( the problem starts here)
cp -r 0.org 0 > /dev/null 2>&1
setFields
interDyMFoam

or no need?
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Old   November 8, 2013, 09:44
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If you execute the Allrun, it does all the stuff for you. Hence, if you give:
Code:
./Allclean
[to clean the case]
and then
Code:
./Allrun
that's it. You have finished your simulation.
Otherwise, you can clean the case (with ./Allclean) and then execute the command by yourself.

Is it clear, now?
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Old   November 8, 2013, 12:09
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Thanks very much. It works fine now.

Kind regards
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