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June 21, 2021, 12:34 |
Mpirun issue centOS 8
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#1 |
Senior Member
Franco
Join Date: Nov 2019
Location: Compiègne, France
Posts: 129
Rep Power: 6 |
hello,
I am trying to install OF V2012 in a centOS 7 and 8 machines, without luck. in centOS7 got this error: Code:
Target: /usr/lib/openfoam/openfoam2006/platforms/linux64GccDPInt32Opt/lib/openmpi-system Source: /usr/lib64/openmpi/lib/openfoam2006 No system mpi lib: /usr/lib64/openmpi/lib/openfoam2006 ... not updating in my ubuntu/WSL machine (windos 10 with ubuntu over windows sub system) OF2012 installed the mpirun version 4.0.3. but in centOS 8 I still have 3.2.1. OF works correctly with the exception to the parallel application that I have an error like the following (log snappyHexMesh parallel). and I face the same error message in centOS7 any help or someone that faced the same issue and have any recomendation would be greatfull. Code:
--> FOAM FATAL ERROR: (openfoam-2012 patch=210414) attempt to run parallel on 1 processor From static bool Foam::UPstream::init(int&, char**&, bool) in file UPstream.C at line 289. FOAM aborting --> FOAM FATAL ERROR: (openfoam-2012 patch=210414) attempt to run parallel on 1 processor From static bool Foam::UPstream::init(int&, char**&, bool) in file UPstream.C at line 289. FOAM aborting #0 #0 Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&) at ??:? at ??:? #1 Foam::error::exitOrAbort(int, bool)#1 Foam::error::exitOrAbort(int, bool) at ??:? #2 Foam::UPstream::init(int&, char**&, bool) at ??:? #2 Foam::UPstream::init(int&, char**&, bool) at ??:? #3 Foam::argList::argList(int&, char**&, bool, bool, bool) at ??:? #3 Foam::argList::argList(int&, char**&, bool, bool, bool) at ??:? #4 at ??:? #4 ?? at ??:? #5 __libc_start_main at ??:? #5 __libc_start_main in /usr/lib64/libc.so.6 #6 in /usr/lib64/libc.so.6 #6 ?? at ??:? [simplex:297835] *** Process received signal *** [simplex:297835] Signal: Aborted (6) [simplex:297835] Signal code: (-6) [simplex:297835] [ 0] /usr/lib64/libpthread.so.0(+0x12b20)[0x7f219f7beb20] [simplex:297835] [ 1] /usr/lib64/libc.so.6(gsignal+0x10f)[0x7f219f4207ff] [simplex:297835] [ 2] /usr/lib64/libc.so.6(abort+0x127)[0x7f219f40ac35] [simplex:297835] [ 3] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error11exitOrAbortEib+0x296)[0x7f21a088c5c6] [simplex:297835] [ 4] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/sys-openmpi/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x19f9)[0x7f219f1de299] [simplex:297835] [ 5] at ??:? [simplex:297834] *** Process received signal *** [simplex:297834] Signal: Aborted (6) [simplex:297834] Signal code: (-6) [simplex:297834] [ 0] /usr/lib64/libpthread.so.0(+0x12b20)[0x7f71ebcbab20] [simplex:297834] [ 1] /usr/lib64/libc.so.6(gsignal+0x10f)[0x7f71eb91c7ff] [simplex:297834] [ 2] /usr/lib64/libc.so.6(abort+0x127)[0x7f71eb906c35] [simplex:297834] [ 3] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error11exitOrAbortEib+0x296)[0x7f71ecd885c6] [simplex:297834] [ 4] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/sys-openmpi/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x19f9)[0x7f71eb6da299] [simplex:297834] [ 5] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x97d)[0x7f21a08b236d] [simplex:297835] [ 6] snappyHexMesh[0x4203b2] [simplex:297835] [ 7] /usr/lib64/libc.so.6(__libc_start_main+0xf3)[0x7f219f40c7b3] [simplex:297835] [ 8] snappyHexMesh[0x42651e] [simplex:297835] *** End of error message *** /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x97d)[0x7f71ecdae36d] [simplex:297834] [ 6] snappyHexMesh[0x4203b2] [simplex:297834] [ 7] /usr/lib64/libc.so.6(__libc_start_main+0xf3)[0x7f71eb9087b3] [simplex:297834] [ 8] snappyHexMesh[0x42651e] [simplex:297834] *** End of error message *** =================================================================================== = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES = PID 297834 RUNNING AT simplex = EXIT CODE: 134 = CLEANING UP REMAINING PROCESSES = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES =================================================================================== YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6) This typically refers to a problem with your application. Please see the FAQ page for debugging suggestions |
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June 23, 2021, 11:49 |
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#2 |
Senior Member
Mark Olesen
Join Date: Mar 2009
Location: https://olesenm.github.io/
Posts: 1,714
Rep Power: 40 |
Might need to check that your mpi environment modules are properly setup.
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June 23, 2021, 12:52 |
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#3 |
Senior Member
Franco
Join Date: Nov 2019
Location: Compiègne, France
Posts: 129
Rep Power: 6 |
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centos 8, centos7, mpirun |
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