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Old   June 21, 2021, 12:34
Default Mpirun issue centOS 8
  #1
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Franco
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hello,
I am trying to install OF V2012 in a centOS 7 and 8 machines, without luck.

in centOS7 got this error:
Code:
Target: /usr/lib/openfoam/openfoam2006/platforms/linux64GccDPInt32Opt/lib/openmpi-system
Source: /usr/lib64/openmpi/lib/openfoam2006
No system mpi lib: /usr/lib64/openmpi/lib/openfoam2006
... not updating
but in the centOS 8 did not presented any error.
in my ubuntu/WSL machine (windos 10 with ubuntu over windows sub system)
OF2012 installed the mpirun version 4.0.3. but in centOS 8 I still have 3.2.1.
OF works correctly with the exception to the parallel application that I have an error like the following (log snappyHexMesh parallel).
and I face the same error message in centOS7

any help or someone that faced the same issue and have any recomendation would be greatfull.

Code:
--> FOAM FATAL ERROR: (openfoam-2012 patch=210414)
attempt to run parallel on 1 processor

    From static bool Foam::UPstream::init(int&, char**&, bool)
    in file UPstream.C at line 289.

FOAM aborting



--> FOAM FATAL ERROR: (openfoam-2012 patch=210414)
attempt to run parallel on 1 processor

    From static bool Foam::UPstream::init(int&, char**&, bool)
    in file UPstream.C at line 289.

FOAM aborting

#0  #0  Foam::error::printStack(Foam::Ostream&)Foam::error::printStack(Foam::Ostream&) at ??:?
 at ??:?
#1  Foam::error::exitOrAbort(int, bool)#1  Foam::error::exitOrAbort(int, bool) at ??:?
#2  Foam::UPstream::init(int&, char**&, bool) at ??:?
#2  Foam::UPstream::init(int&, char**&, bool) at ??:?
#3  Foam::argList::argList(int&, char**&, bool, bool, bool) at ??:?
#3  Foam::argList::argList(int&, char**&, bool, bool, bool) at ??:?
#4   at ??:?
#4  ?? at ??:?
#5  __libc_start_main at ??:?
#5  __libc_start_main in /usr/lib64/libc.so.6
#6   in /usr/lib64/libc.so.6
#6  ?? at ??:?
[simplex:297835] *** Process received signal ***
[simplex:297835] Signal: Aborted (6)
[simplex:297835] Signal code:  (-6)
[simplex:297835] [ 0] /usr/lib64/libpthread.so.0(+0x12b20)[0x7f219f7beb20]
[simplex:297835] [ 1] /usr/lib64/libc.so.6(gsignal+0x10f)[0x7f219f4207ff]
[simplex:297835] [ 2] /usr/lib64/libc.so.6(abort+0x127)[0x7f219f40ac35]
[simplex:297835] [ 3] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error11exitOrAbortEib+0x296)[0x7f21a088c5c6]
[simplex:297835] [ 4] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/sys-openmpi/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x19f9)[0x7f219f1de299]
[simplex:297835] [ 5]  at ??:?
[simplex:297834] *** Process received signal ***
[simplex:297834] Signal: Aborted (6)
[simplex:297834] Signal code:  (-6)
[simplex:297834] [ 0] /usr/lib64/libpthread.so.0(+0x12b20)[0x7f71ebcbab20]
[simplex:297834] [ 1] /usr/lib64/libc.so.6(gsignal+0x10f)[0x7f71eb91c7ff]
[simplex:297834] [ 2] /usr/lib64/libc.so.6(abort+0x127)[0x7f71eb906c35]
[simplex:297834] [ 3] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam5error11exitOrAbortEib+0x296)[0x7f71ecd885c6]
[simplex:297834] [ 4] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/sys-openmpi/libPstream.so(_ZN4Foam8UPstream4initERiRPPcb+0x19f9)[0x7f71eb6da299]
[simplex:297834] [ 5] /usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x97d)[0x7f21a08b236d]
[simplex:297835] [ 6] snappyHexMesh[0x4203b2]
[simplex:297835] [ 7] /usr/lib64/libc.so.6(__libc_start_main+0xf3)[0x7f219f40c7b3]
[simplex:297835] [ 8] snappyHexMesh[0x42651e]
[simplex:297835] *** End of error message ***
/usr/lib/openfoam/openfoam2012/platforms/linux64GccDPInt32Opt/lib/libOpenFOAM.so(_ZN4Foam7argListC1ERiRPPcbbb+0x97d)[0x7f71ecdae36d]
[simplex:297834] [ 6] snappyHexMesh[0x4203b2]
[simplex:297834] [ 7] /usr/lib64/libc.so.6(__libc_start_main+0xf3)[0x7f71eb9087b3]
[simplex:297834] [ 8] snappyHexMesh[0x42651e]
[simplex:297834] *** End of error message ***

===================================================================================
=   BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
=   PID 297834 RUNNING AT simplex
=   EXIT CODE: 134
=   CLEANING UP REMAINING PROCESSES
=   YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Aborted (signal 6)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
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Old   June 23, 2021, 11:49
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Mark Olesen
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Might need to check that your mpi environment modules are properly setup.
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Old   June 23, 2021, 12:52
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Franco
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Quote:
Originally Posted by olesen View Post
Might need to check that your mpi environment modules are properly setup.
hello,
thanks for the answer,
as mpi did not work correctly even after adding its source, we finished to compile OF directly.
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