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August 30, 2008, 14:10 |
I have a very large pool of co
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#1 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
I have a very large pool of computational resources available using Condor, and would like to perform CFD simulations across this network. Since the software configuration of these computational nodes is largely unknown, I am attempting to statically compile OpenFOAM to allow for simple distribution of the executables I need (just simpleFOAM and icoFOAM). I am, however, running in to a large number of problems when trying to statically compile these needed executables.
1. I have changed the Allmake scripts to call wmake lib rather than wmake libso for all library instances. These libraries result in *.a's, without error. 2. I have added a -static flag to both the c and c++ rules files in wmake/rules/linuxGcc/c and wmake/rules/linuxGcc/c++ I am, however, still receiving an overwhelming number of errors during the compile/linking of any of the executables. See below: g++ -m32 -static -Dlinux -DDP -O3 -DNoRepository -ftemplate-depth-40 -I/home/user/OpenFOAM/OpenFOAM-1.5/src/finiteVolume/lnInclude -I/home/user/OpenFOAM/OpenFOAM-1.5/src/sampling/lnInclude -IlnInclude -I. -I/home/user/OpenFOAM/OpenFOAM-1.5/src/OpenFOAM/lnInclude -I/home/user/OpenFOAM/OpenFOAM-1.5/src/OSspecific/Unix/lnInclude -fPIC -pthread -lOpenFOAM -lPstream Make/linuxGccDPOpt/financialFoam.o -L/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt \ -lsampling -lmeshTools -lfiniteVolume -lOpenFOAM -ldl -lm -o /home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/financialFoam /home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libOpenFOAM.a(dlLibraryTable. o): In function `Foam::dlLibraryTable::open(Foam::fileName const&)': dlLibraryTable.C.text+0x404): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Make/linuxGccDPOpt/financialFoam.o: In function `main': financialFoam.C.text+0x15ef): undefined reference to `Foam::cpuTime::elapsedCpuTime() const' Make/linuxGccDPOpt/financialFoam.o: In function `Foam::GeometricField<double,>::GeometricBoundaryF ield::evaluate()': financialFoam.C.text._ZN4Foam14GeometricFieldIdNS_12fvPatchFieldE NS_7volMeshEE22GeometricBounda ryField8evaluateEv[Foam::GeometricField<double,>::GeometricBoundaryFi eld::evalua te()]+0x469): undefined reference to `Foam::IPstream::waitRequests()' financialFoam.C.text._ZN4Foam14GeometricFieldIdNS_12fvPatchFieldE NS_7volMeshEE22GeometricBounda ryField8evaluateEv[Foam::GeometricField<double,>::GeometricBoundaryFi eld::evalua te()]+0x471): undefined reference to `Foam:Pstream::waitRequests()' /home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvMeshGeome try.o): In function `Foam::GeometricField<foam::vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate() ': fvMeshGeometry.C.text._ZN4Foam14GeometricFieldINS_6VectorIdEENS_12 fvPatchFieldENS_7volMeshEE22Ge ometricBoundaryField8evaluateEv[Foam::GeometricField<foam::vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()]+0x469): undefined reference to `Foam::IPstream::waitRequests()' fvMeshGeometry.C.text._ZN4Foam14GeometricFieldINS_6VectorIdEENS_12 fvPatchFieldENS_7volMeshEE22Ge ometricBoundaryField8evaluateEv[Foam::GeometricField<foam::vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::evaluate()]+0x471): undefined reference to `Foam:Pstream::waitRequests()' /home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvMesh.o): In function `Foam::fvMesh::fvMesh(Foam::IOobject const&)': fvMesh.C.text+0x300d): undefined reference to `Foam::file(Foam::fileName const&)' fvMesh.C.text+0x3290): undefined reference to `Foam::file(Foam::fileName const&)' /home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvMesh.o): In function `Foam::fvMesh::fvMesh(Foam::IOobject const&)': fvMesh.C.text+0x400d): undefined reference to `Foam::file(Foam::fileName const&)' fvMesh.C.text+0x4290): undefined reference to `Foam::file(Foam::fileName const&)' /home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(fvScalarMat rix.o): In function `Foam::fvMatrix<double>::setComponentReference(int , int, unsigned char, double)': fvScalarMatrix.C.text+0x18c1): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' fvScalarMatrix.C.text+0x1944): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' fvScalarMatrix.C.text+0x19c9): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' fvScalarMatrix.C.text+0x1a54): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' fvScalarMatrix.C.text+0x1c23): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' fvScalarMatrix.C.text+0x1c4b): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' fvScalarMatrix.C.text+0x1c73): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' fvScalarMatrix.C.text+0x1c9b): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' /home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libfiniteVolume.a(surfaceInte rpolation.o): In function `Foam::surfaceInterpolation::makeCorrectionVectors () const': surfaceInterpolation.C.text+0x1c00): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' surfaceInterpolation.C.text+0x1c31): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' surfaceInterpolation.C.text+0x1c78): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' surfaceInterpolation.C.text+0x1cb9): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' surfaceInterpolation.C.text+0x1e5b): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' surfaceInterpolation.C.text+0x1e8c): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' surfaceInterpolation.C.text+0x1ed3): undefined reference to `Foam::IPstream::read(Foam::Pstream::commsTypes, int, char*, int)' surfaceInterpolation.C.text+0x1f14): undefined reference to `Foam:Pstream::write(Foam::Pstream::commsTypes, int, char const*, int)' These errors continue and occur for the compile/link of every executable (resulting in no binaries at all). I remade libOpenFOAM, believing that it was the problem, but the errors were the same. I have also added -lOpenFOAM and -lPstream to the link lines in the rules directory, but with no result. In an act of final desperation, I actually added references to every *.a file located in /lib/linuxGcc to the link path in rules. I still receive the same errors. Oddly enough, removing the -static flag from the rules files results in working (but dynamically/shared linked) executables, with no errors. Am I missing another step in my static compilation that the shared libraries somehow account for? I have been working on this for a little over a month now, any help would be extremely appreciated. Thanks, David |
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September 1, 2008, 04:21 |
Easy way out is to run 'statif
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#2 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
Posts: 1,419
Rep Power: 26 |
Easy way out is to run 'statifier'. Converts executable with its libraries into single statically linked executable. Google for 'ELF statifier'.
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September 1, 2008, 10:45 |
Thanks, I will try it.
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#3 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
Thanks, I will try it.
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September 1, 2008, 11:20 |
I have tried using statifier t
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#4 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
I have tried using statifier to compose the pseudo-static executables of both icoFoam and simpleFoam. However, when I try to run either of these new executables I receive a segmentation fault.
I recieve the following output from both files: Exec : ./simpleFoamStatic Date : Sep 01 2008 Time : 02:56:47 Host : --------------- PID : 18460 Segmentation fault Thanks, David |
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September 1, 2008, 11:22 |
Running the program in gdb, sh
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#5 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
Running the program in gdb, shows the following error messages:
Exec : /home/herzfeldd/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoamStat ic Date : Sep 01 2008 Time : 03:01:20 Host : sunpassage.eng.mu.edu PID : 18469 [New Thread 0xb7f2cae0 (LWP 18469)] Program received signal SIGSEGV, Segmentation fault. 0x00899c48 in strcmp () from /lib/ld-linux.so.2 Missing separate debuginfos, use: debuginfo-install glibc.i686 David |
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September 1, 2008, 12:58 |
I just did (with statifier 1.6
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#6 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
Posts: 1,419
Rep Power: 26 |
I just did (with statifier 1.6.3)
statifier `which icoFoam` icoFoam-static and then can run icoFoam-static on cavity tutorial without problems. |
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September 1, 2008, 13:24 |
I am still receiving a segment
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#7 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
I am still receiving a segmentation fault from some executable (not sure if it is the static icoFoam though), perhaps you could shed some light on it.
I performed the same commands that you did: cd ~/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/ statifier `which icoFoam` icoFoam-static An executable, icoFoam-static, results. Running the program with no input results in a segmentation fault. Running the original icoFoam executable on the cavity test cases results in no errors: Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity Cloning cavityFine case from cavity Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine Running mapFields from cavity to cavityFine Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade Running mapFields from cavityFine to cavityGrade Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade Cloning cavityHighRe case from cavity Setting cavityHighRe to generate a secondary vortex Copying cavity/0* directory to cavityHighRe Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped Running mapFields from cavity to cavityClipped Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped fluentMeshToFoam: converting mesh elbow/elbow.msh Running icoFoam on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow Running foamMeshToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow Running foamDataToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow Then I ran ./Allclean and changed Allrun to use the icoFoam-static executable (ie replaced application=`basename $PWD` with application=icoFoam-static), here's the output: Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavity Cloning cavityFine case from cavity Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine Running mapFields from cavity to cavityFine Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityFine /home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21915 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1 Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade Running mapFields from cavityFine to cavityGrade Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityGrade /home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21921 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1 Cloning cavityHighRe case from cavity Setting cavityHighRe to generate a secondary vortex Copying cavity/0* directory to cavityHighRe Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityHighRe /home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21934 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1 Running blockMesh on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped Running mapFields from cavity to cavityClipped Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/cavityClipped /home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21943 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1 fluentMeshToFoam: converting mesh elbow/elbow.msh Running icoFoam-static on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow /home/user/OpenFOAM/OpenFOAM-1.5/bin/tools/RunFunctions: line 33: 21946 Segmentation fault $APP_RUN $* > log.$APP_RUN 2>&1 Running foamMeshToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow Running foamDataToFluent on /home/user/OpenFOAM/OpenFOAM-1.5/tutorials/icoFoam/elbow A BIG thanks for all your help thus far (in one day I am already father along that a whole month previous), David |
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September 1, 2008, 15:13 |
Executables packed with statif
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#8 |
New Member
Valery Reznic
Join Date: Mar 2009
Posts: 9
Rep Power: 17 |
Executables packed with statifier doesn't like systems with vDSO and/or stack randomization.
Executables packed with Ermine - http://magicErmine.com (while propertiary) usually behave themselv on such systems. |
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September 2, 2008, 03:51 |
Hi David,
ran all icoFoam t
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#9 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
Posts: 1,419
Rep Power: 26 |
Hi David,
ran all icoFoam testcases (since your cavity ran fine but not the other cases) successfully. This is on Suse10.2, gcc 4.3.1. Are you running something like Valery suggested (randomisation etc. How do you find this out?) |
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September 2, 2008, 05:27 |
It's looks like you have LD_LI
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#10 |
New Member
Valery Reznic
Join Date: Mar 2009
Posts: 9
Rep Power: 17 |
It's looks like you have LD_LIBRARY_PATH environment variable set.
You can try ./ErmineLight.i386 --ld_library_path="$LD_LIBRARY_PATH" icoFoam --output=icoFoam-static |
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September 2, 2008, 10:20 |
Mattijs, I am not sure how to
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#11 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
Mattijs, I am not sure how to test for vDSO or stack randomization (or confirm that either exist on my system).
However, IT WORKED! Sending LD_LIBRARY_PATH to Ermine produced an executable that works in all test cases. Valery, could you try to explain why Ermine worked but statifier did not? I am a running Fedora Core 9, with SMP enabled on two i686 processors. Thanks for all your help! David |
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September 2, 2008, 10:30 |
Another problem just cropped u
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#12 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
Another problem just cropped up...
The statically compiled executables (icoFoam-static and simpleFoam-static) work correctly on the original computer, but moving these executables over to a different computer with the same architecture produces a segmentation fault immediately. Here is the architecture of the computer that I created the static executables on (uname -a) Linux localhost.localdomain 2.6.25-14.fc9.i686 #1 SMP Thu May 1 06:28:41 EDT 2008 i686 i686 i386 GNU/Linux Here's the new box: Linux localhost2.localdomain 2.6.20-1.2320.fc5smp #1 SMP Tue Jun 12 19:40:16 EDT 2007 i686 i686 i386 GNU/Linux Could it be the differences in the kernel? |
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September 2, 2008, 11:49 |
Hi David!
Can't rule out th
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#13 |
Assistant Moderator
Bernhard Gschaider
Join Date: Mar 2009
Posts: 4,225
Rep Power: 51 |
Hi David!
Can't rule out the kernel. But another thing is that usually OF-executables need a "minimal" OF-environment that consists of (I'm doing this from memory so it's a bit vague) - one or two environment variables ($WM_something ...) - one or two files whose location depends on the environment variables (the system-wide controlDict is one of them I think) If your other machine "sees" your OF-installation (env-variables & files) this shouldn't be the problem) Try to run the executable with strace (this might give you more information on the why of the segmentation fault) Bernhard
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September 2, 2008, 12:12 |
Hi, David.
When you wrote "st
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#14 |
New Member
Valery Reznic
Join Date: Mar 2009
Posts: 9
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Hi, David.
When you wrote "static" you mean packed with Ermine ? If yes could you show output of strace <your_program> Valery. |
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September 2, 2008, 14:02 |
Valey: Yes, when I said "stati
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#15 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
Valey: Yes, when I said "static" I meant packed with Ermine.
Bernhard: I moved the icoFoam and simpleFoam packed executables with an updated kernel, still I receive a segmentation fault. Below is the output for strace and both the local and remote systems (I had to split it all up because it exceeds the size limit for the forum). David |
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September 2, 2008, 14:05 |
Local System:
execve("/home/u
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#16 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
Local System:
execve("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam- static", ["icoFoam-static"], [/* 72 vars */]) = 0 readlink("/proc/self/exe", "/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-static" , 4096) = 83 uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 fstat64(3, {st_mode=S_IFREG|0775, st_size=28475548, ...}) = 0 old_mmap(NULL, 16384, PROT_READ, MAP_PRIVATE, 3, 0xd000) = 0xb7f7d000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 22077440, SEEK_SET) = 22077440 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512) = 512 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 4 lseek(4, 69632, SEEK_SET) = 69632 read(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512) = 512 readlink("/proc/self/exe", "/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-static" , 4096) = 83 lseek(3, -512, SEEK_CUR) = 22077440 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512, 22077440) = 512 old_mmap(0x8048000, 368640, PROT_READ, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000 old_mmap(0x8048000, 364544, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000 lseek(3, 22077440, SEEK_SET) = 22077440 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 364544, 22077440) = 364544 mprotect(0x8048000, 364544, PROT_READ|PROT_EXEC) = 0 old_mmap(0x80a1000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 3, 0x1566000) = 0x80a1000 close(3) = 0 lseek(4, -512, SEEK_CUR) = 69632 pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512, 69632) = 512 old_mmap(0x883000, 122880, PROT_READ, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x883000 old_mmap(0x883000, 114688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x883000 lseek(4, 69632, SEEK_SET) = 69632 pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 114688, 69632) = 114688 mprotect(0x883000, 114688, PROT_READ|PROT_EXEC) = 0 old_mmap(0x89f000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 4, 0x2d000) = 0x89f000 close(4) = 0 brk(0) = 0x109cc000 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7f7c000 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/tls", 0xbf97e430) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 6942720, SEEK_SET) = 6942720 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 512) = 512 mmap2(NULL, 10675996, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x69f) = 0xb754d000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 10675996, 6942720) = 10675996 mprotect(0xb754d000, 10531003, PROT_READ|PROT_EXEC) = 0 mmap2(0xb7f59000, 131072, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x10aa) = 0xb7f59000 mmap2(0xb7f79000, 10012, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7f79000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 2469888, SEEK_SET) = 2469888 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 512) = 512 mmap2(NULL, 3829360, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x25b) = 0xb71a6000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 3829360, 2469888) = 3829360 mprotect(0xb71a6000, 3758785, PROT_READ|PROT_EXEC) = 0 mmap2(0xb753c000, 53248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x5f0) = 0xb753c000 mmap2(0xb7549000, 15984, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7549000 close(3) = 0 stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/tls", 0xbf97e3f8) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib", {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/tls", 0xbf97e3f8) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6", {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib /tls", 0xbf97e3f8) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib ", {st_mode=S_IFDIR|0750, st_size=4096, ...}) = 0 stat64("/lib/tls", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 1970176, SEEK_SET) = 1970176 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 512) = 512 mmap2(0xa39000, 16500, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e1) = 0xa39000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 16500, 1970176) = 16500 mprotect(0xa39000, 8364, PROT_READ|PROT_EXEC) = 0 mmap2(0xa3c000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1e3) = 0xa3c000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 22835200, SEEK_SET) = 22835200 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 512) = 512 mmap2(NULL, 952504, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x15c7) = 0xb70bd000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 952504, 22835200) = 952504 mprotect(0xb70bd000, 905520, PROT_READ|PROT_EXEC) = 0 mmap2(0xb719b000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16a4) = 0xb719b000 mmap2(0xb71a0000, 22712, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb71a0000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 1990656, SEEK_SET) = 1990656 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 512) = 512 mmap2(0xa0e000, 163952, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e6) = 0xa0e000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 163952, 1990656) = 163952 mprotect(0xa0e000, 156364, PROT_READ|PROT_EXEC) = 0 mmap2(0xa35000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x20c) = 0xa35000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 22556672, SEEK_SET) = 22556672 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb70bc000 mmap2(NULL, 51528, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1583) = 0xb70af000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 51528, 22556672) = 51528 mprotect(0xb70af000, 46644, PROT_READ|PROT_EXEC) = 0 mmap2(0xb70bb000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x158e) = 0xb70bb000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 2318336, SEEK_SET) = 2318336 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 512) = 512 mmap2(0xa5e000, 98784, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x236) = 0xa5e000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 98784, 2318336) = 98784 mprotect(0xa5e000, 85088, PROT_READ|PROT_EXEC) = 0 mmap2(0xa73000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x24a) = 0xa73000 mmap2(0xa75000, 4576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa75000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 208896, SEEK_SET) = 208896 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 512) = 512 mmap2(0x8a3000, 1476176, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x33) = 0x8a3000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 1476176, 208896) = 1476176 mprotect(0x8a3000, 1453240, PROT_READ|PROT_EXEC) = 0 mmap2(0xa06000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x196) = 0xa06000 mmap2(0xa09000, 9808, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa09000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 22511616, SEEK_SET) = 22511616 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 38236, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1578) = 0xb70a5000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 38236, 22511616) = 38236 mprotect(0xb70a5000, 33018, PROT_READ|PROT_EXEC) = 0 mmap2(0xb70ae000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1580) = 0xb70ae000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 21483520, SEEK_SET) = 21483520 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 454972, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x147d) = 0xb7035000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 454972, 21483520) = 454972 mprotect(0xb7035000, 450554, PROT_READ|PROT_EXEC) = 0 mmap2(0xb70a3000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x14eb) = 0xb70a3000 mmap2(0xb70a4000, 316, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb70a4000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 19566592, SEEK_SET) = 19566592 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 512) = 512 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7034000 mmap2(NULL, 1680608, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a9) = 0xb6e99000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 1680608, 19566592) = 1680608 mprotect(0xb6e99000, 1661926, PROT_READ|PROT_EXEC) = 0 mmap2(0xb702f000, 16384, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x143f) = 0xb702f000 mmap2(0xb7033000, 1248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7033000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 21987328, SEEK_SET) = 21987328 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 78564, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x14f8) = 0xb6e85000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 78564, 21987328) = 78564 mprotect(0xb6e85000, 77700, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6e98000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x150b) = 0xb6e98000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 27205632, SEEK_SET) = 27205632 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 512) = 512 mmap2(NULL, 510168, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x19f2) = 0xb6e08000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 510168, 27205632) = 510168 mprotect(0xb6e08000, 452196, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6e77000, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1a60) = 0xb6e77000 mmap2(0xb6e7f000, 22744, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6e7f000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 19533824, SEEK_SET) = 19533824 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 21320, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a1) = 0xb6e02000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 21320, 19533824) = 21320 mprotect(0xb6e02000, 20208, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6e07000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x12a6) = 0xb6e07000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 28073984, SEEK_SET) = 28073984 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6e01000 mmap2(NULL, 339872, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1ac6) = 0xb6dae000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 339872, 28073984) = 339872 mprotect(0xb6dae000, 327544, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6dfe000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1b16) = 0xb6dfe000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 27803648, SEEK_SET) = 27803648 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 362688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1a84) = 0xb6d55000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 362688, 27803648) = 362688 mprotect(0xb6d55000, 213688, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6d8a000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1ab8) = 0xb6d8a000 mmap2(0xb6d8c000, 137408, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6d8c000 close(3) = 0 open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls/i386", 0xbf97db74) = -1 ENOENT (No such file or directory) open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls", 0xbf97db74) = -1 ENOENT (No such file or directory) open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/i386", 0xbf97db74) = -1 ENOENT (No such file or directory) open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib", 0xbf97db74) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 2203648, SEEK_SET) = 2203648 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 512) = 512 mmap2(0x7ca000, 104392, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x21a) = 0x7ca000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 104392, 2203648) = 104392 mprotect(0x7ca000, 87276, PROT_READ|PROT_EXEC) = 0 mmap2(0x7e0000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x22f) = 0x7e0000 mmap2(0x7e2000, 6088, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7e2000 close(3) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam-st atic", O_RDONLY) = 3 lseek(3, 2453504, SEEK_SET) = 2453504 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 512) = 512 mmap2(0x74ad000, 12420, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x257) = 0x74ad000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 12420, 2453504) = 12420 mprotect(0x74ad000, 6148, PROT_READ|PROT_EXEC) = 0 mmap2(0x74af000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x258) = 0x74af000 close(3) = 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d54000 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d53000 set_thread_area({entry_number:-1 -> 6, base_addr:0xb6d538e0, limit:1048575, seg_32bit:1, contents:0, read_exec_only:0, limit_in_pages:1, seg_not_present:0, useable:1}) = 0 set_tid_address(0xb6d53928) = 25610 set_robust_list(0xb6d53930, 0xc) = 0 futex(0xbf97eb80, FUTEX_WAKE_PRIVATE, 1) = 0 rt_sigaction(SIGRTMIN, {0xa622c0, [], SA_SIGINFO}, NULL, 8) = 0 rt_sigaction(SIGRT_1, {0xa62700, [], SA_RESTART|SA_SIGINFO}, NULL, 8) = 0 rt_sigprocmask(SIG_UNBLOCK, [RTMIN RT_1], NULL, 8) = 0 getrlimit(RLIMIT_STACK, {rlim_cur=10240*1024, rlim_max=RLIM_INFINITY}) = 0 uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0 futex(0xb71a06dc, FUTEX_WAKE_PRIVATE, 2147483647) = 0 futex(0xb71a5848, FUTEX_WAKE_PRIVATE, 2147483647) = 0 futex(0xb71a5868, FUTEX_WAKE_PRIVATE, 2147483647) = 0 brk(0) = 0x109cc000 brk(0x109ed000) = 0x109ed000 stat64("/root/.OpenFOAM", 0xbf97e824) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM", {st_mode=S_IFDIR|0775, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/site/1.5/controlDict", 0xbf97e814) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/1.5/controlDict", 0xbf97e7d4) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/1.5/controlDict.gz", 0xbf97e7d4) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/controlDict", 0xbf97e814) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/controlDict", 0xbf97e7d4) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/controlDict.gz", 0xbf97e7d4) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/etc/controlDict", {st_mode=S_IFREG|0640, st_size=25240, ...}) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/etc/controlDict", O_RDONLY|O_LARGEFILE) = 3 read(3, "/*------------------------------"..., 8191) = 8191 read(3, "0;\n cellToCell 0;\n "..., 8191) = 8191 brk(0x10a0e000) = 0x10a0e000 brk(0x10a0d000) = 0x10a0d000 read(3, "orinsky 0;\n mixedUnburntEn"..., 8191) = 8191 read(3, "Universal gas constant [J/(kmol "..., 8191) = 667 read(3, "", 8191) = 0 close(3) = 0 brk(0x10a2e000) = 0x10a2e000 stat64("/dev/null.gz", 0xbf97e824) = -1 ENOENT (No such file or directory) stat64("/dev/null.gz.gz", 0xbf97e824) = -1 ENOENT (No such file or directory) open("/dev/null", O_WRONLY|O_CREAT|O_TRUNC|O_LARGEFILE, 0666) = 3 stat64("/root/.OpenFOAM", 0xbf97e854) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM", {st_mode=S_IFDIR|0775, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/site/1.5/cellModels", 0xbf97e844) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/1.5/cellModels", 0xbf97e804) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/1.5/cellModels.gz", 0xbf97e804) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/cellModels", 0xbf97e844) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/cellModels", 0xbf97e804) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/site/cellModels.gz", 0xbf97e804) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/etc/cellModels", {st_mode=S_IFREG|0640, st_size=7754, ...}) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/etc/cellModels", O_RDONLY|O_LARGEFILE) = 4 read(4, "/*------------------------------"..., 8191) = 7754 close(4) = 0 uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0 times({tms_utime=24, tms_stime=5, tms_cutime=0, tms_cstime=0}) = 558148283 brk(0x10a4f000) = 0x10a4f000 fstat64(1, {st_mode=S_IFCHR|0620, st_rdev=makedev(136, 0), ...}) = 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d52000 write(1, "/*------------------------------"..., 80/*---------------------------------------------------------------------------* \ ) = 80 write(1, "| ========= | "..., 160| ========= | | | \ / F ield | OpenFOAM: The Open Source CFD Toolbox | ) = 160 write(1, "| \\ / O peration | Ve"..., 320| \ / O peration | Version: 1.5 | | \ / A nd | Web: http://www.OpenFOAM.org | | \/ M anipulation | | \*---------------------------------------------------------------------------*/ Continued Below |
|
September 2, 2008, 14:06 |
) = 320
time(NULL)
|
#17 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
) = 320
time(NULL) = 1220351549 open("/etc/localtime", O_RDONLY) = 4 fstat64(4, {st_mode=S_IFREG|0644, st_size=3543, ...}) = 0 fstat64(4, {st_mode=S_IFREG|0644, st_size=3543, ...}) = 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d51000 read(4, "TZif2\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\0\5\0\0\0 \5\0\0\0\0"..., 4096) = 3543 _llseek(4, -24, [3519], SEEK_CUR) = 0 read(4, "\nCST6CDT,M3.2.0,M11.1.0\n", 4096) = 24 close(4) = 0 munmap(0xb6d51000, 4096) = 0 time(NULL) = 1220351549 stat64("/etc/localtime", {st_mode=S_IFREG|0644, st_size=3543, ...}) = 0 uname({sys="Linux", node="locahost.eng.mu.edu", ...}) = 0 write(1, "Exec : icoFoam-static\n", 24Exec : icoFoam-static ) = 24 write(1, "Date : Sep 02 2008\n", 21Date : Sep 02 2008 ) = 21 write(1, "Time : 05:32:29\n", 18Time : 05:32:29 ) = 18 write(1, "Host : locahost.eng.mu.edu\n", 31Host : locahost.eng.mu.edu ) = 31 write(1, "PID : 25610\n", 15PID : 25610 ) = 15 getuid32() = 0 socket(PF_FILE, SOCK_STREAM, 0) = 4 fcntl64(4, F_SETFL, O_RDWR|O_NONBLOCK) = 0 connect(4, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) = -1 ENOENT (No such file or directory) close(4) = 0 socket(PF_FILE, SOCK_STREAM, 0) = 4 fcntl64(4, F_SETFL, O_RDWR|O_NONBLOCK) = 0 connect(4, {sa_family=AF_FILE, path="/var/run/nscd/socket"}, 110) = -1 ENOENT (No such file or directory) close(4) = 0 open("/etc/nsswitch.conf", O_RDONLY) = 4 fstat64(4, {st_mode=S_IFREG|0644, st_size=1708, ...}) = 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d51000 read(4, "#\n# /etc/nsswitch.conf\n#\n# An ex"..., 4096) = 1708 read(4, "", 4096) = 0 close(4) = 0 munmap(0xb6d51000, 4096) = 0 open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/tls/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/tls/libnss_fi les.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/libnss_files. so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/tls/libns s_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/libnss_fi les.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib/t ls/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib/l ibnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/lib/tls/libnss_files.so.2", O_RDONLY) = -1 ENOENT (No such file or directory) open("/lib/libnss_files.so.2", O_RDONLY) = 4 read(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 512) = 512 fstat64(4, {st_mode=S_IFREG|0755, st_size=54828, ...}) = 0 mmap2(NULL, 45712, PROT_READ|PROT_EXEC, MAP_PRIVATE|MAP_DENYWRITE, 4, 0) = 0x111000 mmap2(0x11b000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 4, 0xa) = 0x11b000 close(4) = 0 mprotect(0x11b000, 4096, PROT_READ) = 0 open("/etc/passwd", O_RDONLY|0x80000 /* O_??? */) = 4 fcntl64(4, F_GETFD) = 0x1 (flags FD_CLOEXEC) fstat64(4, {st_mode=S_IFREG|0644, st_size=1918, ...}) = 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d51000 read(4, "root:x:0:0:root:/root:/bin/bash\n"..., 4096) = 1918 close(4) = 0 munmap(0xb6d51000, 4096) = 0 getcwd("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", 255) = 69 getppid() = 25609 getpgrp() = 25609 getcwd("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", 255) = 69 write(1, "Case : /home/user/OpenFOA"..., 78Case : /home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt ) = 78 write(1, "nProcs : 1\n", 11nProcs : 1 ) = 11 rt_sigaction(SIGFPE, {0xb74bd220, [], SA_NOMASK}, {SIG_DFL}, 8) = 0 rt_sigaction(SIGINT, {0xb74bf2a0, [], SA_NOMASK}, {SIG_DFL}, 8) = 0 rt_sigaction(SIGQUIT, {0xb74bf680, [], SA_NOMASK}, {SIG_DFL}, 8) = 0 rt_sigaction(SIGSEGV, {0xb74beeb0, [], SA_NOMASK}, {SIG_DFL}, 8) = 0 write(1, "\n", 1 ) = 1 write(1, "// * * * * * * * * * * * * * * *"..., 80// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // ) = 80 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", {st_mode=S_IFDIR|0750, st_size=12288, ...}) = 0 write(1, "Create time\n", 12Create time ) = 12 write(1, "\n", 1 ) = 1 time(NULL) = 1220351549 times({tms_utime=24, tms_stime=5, tms_cutime=0, tms_cstime=0}) = 558148284 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/system/c ontrolDict", 0xbf97cdc4) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/system/c ontrolDict.gz", 0xbf97cdc4) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/system", 0xbf97cdf4) = -1 ENOENT (No such file or directory) open("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt", O_RDONLY|O_NONBLOCK|O_LARGEFILE|O_DIRECTORY|0x8000 0) = 4 fstat64(4, {st_mode=S_IFDIR|0750, st_size=12288, ...}) = 0 fcntl64(4, F_GETFD) = 0x1 (flags FD_CLOEXEC) getdents(4, /* 153 entries */, 4096) = 4084 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/subsetMe sh", {st_mode=S_IFREG|0775, st_size=1037469, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/molConfi g", {st_mode=S_IFREG|0775, st_size=103337, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/flattenM esh", {st_mode=S_IFREG|0775, st_size=42625, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoPimpl eFoam", {st_mode=S_IFREG|0775, st_size=501106, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/lesCavit atingFoam", {st_mode=S_IFREG|0775, st_size=810876, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/wallGrad U", {st_mode=S_IFREG|0775, st_size=114253, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/mergeMes hes", {st_mode=S_IFREG|0775, st_size=80454, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToEn sightParts", {st_mode=S_IFREG|0775, st_size=478454, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceT oPatch", {st_mode=S_IFREG|0775, st_size=61049, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/patchInt egrate", {st_mode=S_IFREG|0775, st_size=149773, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/PDRFoam" , {st_mode=S_IFREG|0775, st_size=1413336, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoSimpl eFoam", {st_mode=S_IFREG|0775, st_size=470034, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/insideCe lls", {st_mode=S_IFREG|0775, st_size=24585, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/splitCel ls", {st_mode=S_IFREG|0775, st_size=69648, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceC oarsen", {st_mode=S_IFREG|0775, st_size=64313, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/momentSc alarError", {st_mode=S_IFREG|0775, st_size=401656, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/nonNewto nianIcoFoam", {st_mode=S_IFREG|0775, st_size=429898, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceC onvert", {st_mode=S_IFREG|0775, st_size=23431, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/plot3dTo Foam", {st_mode=S_IFREG|0775, st_size=53279, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToFi eldview9", {st_mode=S_IFREG|0775, st_size=454568, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/enstroph y", {st_mode=S_IFREG|0775, st_size=283835, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/tetgenTo Foam", {st_mode=S_IFREG|0775, st_size=58406, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/stressCo mponents", {st_mode=S_IFREG|0775, st_size=400764, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoPorou sSimpleFoam", {st_mode=S_IFREG|0775, st_size=580651, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/netgenNe utralToFoam", {st_mode=S_IFREG|0775, st_size=44938, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/splitMes hRegions", {st_mode=S_IFREG|0775, st_size=1002549, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/twoLiqui dMixingFoam", {st_mode=S_IFREG|0775, st_size=741090, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/Lambda2" , {st_mode=S_IFREG|0775, st_size=361430, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/moveDyna micMesh", {st_mode=S_IFREG|0775, st_size=17227, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/settling Foam", {st_mode=S_IFREG|0775, st_size=876824, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/compress ibleLesInterFoam", {st_mode=S_IFREG|0775, st_size=818388, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/checkMes h", {st_mode=S_IFREG|0775, st_size=121348, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToEn sight", {st_mode=S_IFREG|0775, st_size=677414, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/writeMes hObj", {st_mode=S_IFREG|0775, st_size=79346, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/decompos ePar", {st_mode=S_IFREG|0775, st_size=1271300, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/surfaceR efineRedGreen", {st_mode=S_IFREG|0775, st_size=23409, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/refineme ntLevel", {st_mode=S_IFREG|0775, st_size=135846, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamForm atConvert", {st_mode=S_IFREG|0775, st_size=80315, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/chtMulti RegionFoam", {st_mode=S_IFREG|0775, st_size=684539, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/extrude2 DMesh", {st_mode=S_IFREG|0775, st_size=55690, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/financia lFoam", {st_mode=S_IFREG|0775, st_size=342290, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/interFoa m", {st_mode=S_IFREG|0775, st_size=696668, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/refineHe xMesh", {st_mode=S_IFREG|0775, st_size=753440, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoMomen tError", {st_mode=S_IFREG|0775, st_size=482710, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/setField s", {st_mode=S_IFREG|0775, st_size=412858, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/setsToZo nes", {st_mode=S_IFREG|0775, st_size=59374, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/polyDual Mesh", {st_mode=S_IFREG|0775, st_size=32966, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/gmshToFo am", {st_mode=S_IFREG|0775, st_size=103042, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/solidEqu ilibriumDisplacementFoam", {st_mode=S_IFREG|0775, st_size=654818, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/probeLoc ations", {st_mode=S_IFREG|0775, st_size=27683, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/foamToSt arMesh", {st_mode=S_IFREG|0775, st_size=44466, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/ansysToF oam", {st_mode=S_IFREG|0775, st_size=106075, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/twoPhase EulerFoam", {st_mode=S_IFREG|0775, st_size=1038023, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rasCavit atingFoam", {st_mode=S_IFREG|0775, st_size=655283, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/Co", {st_mode=S_IFREG|0775, st_size=182629, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/buoyantS impleRadiationFoam", {st_mode=S_IFREG|0775, st_size=500626, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/oodles", {st_mode=S_IFREG|0775, st_size=420374, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/attachMe sh", {st_mode=S_IFREG|0775, st_size=25383, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/sonicTur bFoam", {st_mode=S_IFREG|0775, st_size=474849, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/turbFoam ", {st_mode=S_IFREG|0775, st_size=420314, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/engineSw irl", {st_mode=S_IFREG|0775, st_size=114690, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/transfor mPoints", {st_mode=S_IFREG|0775, st_size=696672, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/pdfPlot" , {st_mode=S_IFREG|0775, st_size=19046, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/mshToFoa m", {st_mode=S_IFREG|0775, st_size=31613, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/scalarTr ansportFoam", {st_mode=S_IFREG|0775, st_size=323068, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/redistri buteMeshPar", {st_mode=S_IFREG|0775, st_size=873997, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/renumber Mesh", {st_mode=S_IFREG|0775, st_size=726971, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/rhoSonic Foam", {st_mode=S_IFREG|0775, st_size=411784, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/interPha seChangeFoam", {st_mode=S_IFREG|0775, st_size=965533, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/autoPatc h", {st_mode=S_IFREG|0775, st_size=63198, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/vorticit y", {st_mode=S_IFREG|0775, st_size=282629, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/mergeOrS plitBaffles", {st_mode=S_IFREG|0775, st_size=735566, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/buoyantF oam", {st_mode=S_IFREG|0775, st_size=515293, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/coldEngi neFoam", {st_mode=S_IFREG|0775, st_size=497020, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/sonicLiq uidFoam", {st_mode=S_IFREG|0775, st_size=483356, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/refineWa llLayer", {st_mode=S_IFREG|0775, st_size=71319, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/coodles" , {st_mode=S_IFREG|0775, st_size=479299, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/extrudeM esh", {st_mode=S_IFREG|0775, st_size=147666, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/yPlusLES ", {st_mode=S_IFREG|0775, st_size=291233, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/Q", {st_mode=S_IFREG|0775, st_size=283713, ...}) = 0 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/dnsFoam" , {st_mode=S_IFREG|0775, st_size=522006, ...}) = 0 write(2, "fileName::stripInvalid() called "..., 53fileName::stripInvalid() called for invalid fileName ) = 53 write(2, "libfiniteVolume.so", 18libfiniteVolume.so) = 18 write(2, "\n", 1 ) = 1 write(2, " For debug level (= ", 23 For debug level (= ) = 23 write(2, "2", 12) = 1 write(2, ") > 1 this is considered fatal", 30) > 1 this is considered fatal) = 30 write(2, "\n", 1 ) = 1 rt_sigprocmask(SIG_UNBLOCK, [ABRT], NULL, 8) = 0 tgkill(25610, 25610, SIGABRT) = 0 --- SIGABRT (Aborted) @ 0 (0) --- +++ killed by SIGABRT +++ Note: An error has appeared on this system (that perhaps I did not see before). fileName::stripInvalid() called for invalid fileName libfiniteVolume.so For debug level (= 2) > 1 this is considered fatal Aborted One the remote system, I receive `strace icoFoam-static`: execve("./icoFoam-static", ["./icoFoam-static"], [/* 45 vars */]) = 0 readlink("/proc/self/exe", "/home/user/Desktop/icoFoam-static", 4096) = 34 uname({sys="Linux", node="locahost2", ...}) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 fstat64(3, {st_mode=S_IFREG|0775, st_size=28475548, ...}) = 0 old_mmap(NULL, 16384, PROT_READ, MAP_PRIVATE, 3, 0xd000) = 0xb7f9d000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 22077440, SEEK_SET) = 22077440 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512) = 512 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 4 lseek(4, 69632, SEEK_SET) = 69632 read(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512) = 512 readlink("/proc/self/exe", "/home/user/Desktop/icoFoam-static", 4096) = 34 lseek(3, -512, SEEK_CUR) = 22077440 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 512, 22077440) = 512 old_mmap(0x8048000, 368640, PROT_READ, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000 old_mmap(0x8048000, 364544, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x8048000 lseek(3, 22077440, SEEK_SET) = 22077440 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\2\0\3\0\1\0\0\0\3 20\220\5\0104\0\0\0"..., 364544, 22077440) = 364544 mprotect(0x8048000, 364544, PROT_READ|PROT_EXEC) = 0 old_mmap(0x80a1000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 3, 0x1566000) = 0x80a1000 close(3) = 0 lseek(4, -512, SEEK_CUR) = 69632 pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 512, 69632) = 512 old_mmap(0x883000, 122880, PROT_READ, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0x883000 old_mmap(0x883000, 114688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x883000 lseek(4, 69632, SEEK_SET) = 69632 pread64(4, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 08\210\0004\0\0\0"..., 114688, 69632) = 114688 mprotect(0x883000, 114688, PROT_READ|PROT_EXEC) = 0 old_mmap(0x89f000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED, 4, 0x2d000) = 0x89f000 close(4) = 0 brk(0) = 0x119cb000 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7f9c000 stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/tls", 0xbfa9d680) = -1 ENOENT (No such file or directory) open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 6942720, SEEK_SET) = 6942720 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 512) = 512 mmap2(NULL, 10675996, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x69f) = 0xb756d000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 207#\0004\0\0\0"..., 10675996, 6942720) = 10675996 mprotect(0xb756d000, 10531003, PROT_READ|PROT_EXEC) = 0 mmap2(0xb7f79000, 131072, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x10aa) = 0xb7f79000 mmap2(0xb7f99000, 10012, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7f99000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 2469888, SEEK_SET) = 2469888 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 512) = 512 mmap2(NULL, 3829360, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x25b) = 0xb71c6000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0P\ 20\f\0004\0\0\0"..., 3829360, 2469888) = 3829360 mprotect(0xb71c6000, 3758785, PROT_READ|PROT_EXEC) = 0 mmap2(0xb755c000, 53248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x5f0) = 0xb755c000 mmap2(0xb7569000, 15984, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7569000 close(3) = 0 stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib/tls", 0xbfa9d648) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/lib", 0xbfa9d648) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6/tls", 0xbfa9d648) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt/openmpi-1.2.6", 0xbfa9d648) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib /tls", 0xbfa9d648) = -1 ENOENT (No such file or directory) stat64("/home/user/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/lib ", 0xbfa9d648) = -1 ENOENT (No such file or directory) stat64("/lib/tls", {st_mode=S_IFDIR|0755, st_size=4096, ...}) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 1970176, SEEK_SET) = 1970176 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 512) = 512 mmap2(0xa39000, 16500, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e1) = 0xa39000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0`\ 232\243\0004\0\0\0"..., 16500, 1970176) = 16500 mprotect(0xa39000, 8364, PROT_READ|PROT_EXEC) = 0 mmap2(0xa3c000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1e3) = 0xa3c000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 22835200, SEEK_SET) = 22835200 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 512) = 512 mmap2(NULL, 952504, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x15c7) = 0xb70dd000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 00\352\3\0004\0\0\0"..., 952504, 22835200) = 952504 mprotect(0xb70dd000, 905520, PROT_READ|PROT_EXEC) = 0 mmap2(0xb71bb000, 20480, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x16a4) = 0xb71bb000 mmap2(0xb71c0000, 22712, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb71c0000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 1990656, SEEK_SET) = 1990656 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 512) = 512 mmap2(0xa0e000, 163952, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1e6) = 0xa0e000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \24\241\0004\0\0\0"..., 163952, 1990656) = 163952 mprotect(0xa0e000, 156364, PROT_READ|PROT_EXEC) = 0 mmap2(0xa35000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x20c) = 0xa35000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 22556672, SEEK_SET) = 22556672 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb70dc000 mmap2(NULL, 51528, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1583) = 0xb70cf000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\30\0\0004\0\0\0"..., 51528, 22556672) = 51528 mprotect(0xb70cf000, 46644, PROT_READ|PROT_EXEC) = 0 mmap2(0xb70db000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x158e) = 0xb70db000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 2318336, SEEK_SET) = 2318336 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 512) = 512 mmap2(0xa5e000, 98784, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x236) = 0xa5e000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 0(\246\0004\0\0\0"..., 98784, 2318336) = 98784 mprotect(0xa5e000, 85088, PROT_READ|PROT_EXEC) = 0 mmap2(0xa73000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x24a) = 0xa73000 mmap2(0xa75000, 4576, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa75000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 208896, SEEK_SET) = 208896 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 512) = 512 mmap2(0x8a3000, 1476176, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x33) = 0x8a3000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0@\ 227\213\0004\0\0\0"..., 1476176, 208896) = 1476176 mprotect(0x8a3000, 1453240, PROT_READ|PROT_EXEC) = 0 mmap2(0xa06000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x196) = 0xa06000 mmap2(0xa09000, 9808, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xa09000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 22511616, SEEK_SET) = 22511616 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 38236, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1578) = 0xb70c5000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 60*\0\0004\0\0\0"..., 38236, 22511616) = 38236 mprotect(0xb70c5000, 33018, PROT_READ|PROT_EXEC) = 0 mmap2(0xb70ce000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1580) = 0xb70ce000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 21483520, SEEK_SET) = 21483520 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 454972, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x147d) = 0xb7055000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 60\334\0\0004\0\0\0"..., 454972, 21483520) = 454972 mprotect(0xb7055000, 450554, PROT_READ|PROT_EXEC) = 0 mmap2(0xb70c3000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x14eb) = 0xb70c3000 mmap2(0xb70c4000, 316, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb70c4000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 19566592, SEEK_SET) = 19566592 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 512) = 512 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb7054000 mmap2(NULL, 1680608, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a9) = 0xb6eb9000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\0 f\4\0004\0\0\0"..., 1680608, 19566592) = 1680608 mprotect(0xb6eb9000, 1661926, PROT_READ|PROT_EXEC) = 0 mmap2(0xb704f000, 16384, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x143f) = 0xb704f000 mmap2(0xb7053000, 1248, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb7053000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 21987328, SEEK_SET) = 21987328 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 78564, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x14f8) = 0xb6ea5000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \26\0\0004\0\0\0"..., 78564, 21987328) = 78564 mprotect(0xb6ea5000, 77700, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6eb8000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x150b) = 0xb6eb8000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 27205632, SEEK_SET) = 27205632 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 512) = 512 mmap2(NULL, 510168, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x19f2) = 0xb6e28000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 20*\1\0004\0\0\0"..., 510168, 27205632) = 510168 mprotect(0xb6e28000, 452196, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6e97000, 32768, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1a60) = 0xb6e97000 mmap2(0xb6e9f000, 22744, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6e9f000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 19533824, SEEK_SET) = 19533824 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 21320, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x12a1) = 0xb6e22000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\3 40\"\0\0004\0\0\0"..., 21320, 19533824) = 21320 mprotect(0xb6e22000, 20208, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6e27000, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x12a6) = 0xb6e27000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 28073984, SEEK_SET) = 28073984 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6e21000 mmap2(NULL, 339872, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1ac6) = 0xb6dce000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\334\0\0004\0\0\0"..., 339872, 28073984) = 339872 mprotect(0xb6dce000, 327544, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6e1e000, 12288, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1b16) = 0xb6e1e000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 27803648, SEEK_SET) = 27803648 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 512) = 512 mmap2(NULL, 362688, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x1a84) = 0xb6d75000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\0\2 20\233\0\0004\0\0\0"..., 362688, 27803648) = 362688 mprotect(0xb6d75000, 213688, PROT_READ|PROT_EXEC) = 0 mmap2(0xb6daa000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x1ab8) = 0xb6daa000 mmap2(0xb6dac000, 137408, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0xb6dac000 close(3) = 0 open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls/i386", 0xbfa9cdc4) = -1 ENOENT (No such file or directory) open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/tls/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/tls", 0xbfa9cdc4) = -1 ENOENT (No such file or directory) open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/i386/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib/i386", 0xbfa9cdc4) = -1 ENOENT (No such file or directory) open("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOpt/ lib/libnsl.so.1", O_RDONLY) = -1 ENOENT (No such file or directory) stat64("/home/dm2/henry/OpenFOAM/ThirdParty/openmpi-1.2.6/platforms/linuxGccDPOp t/lib", 0xbfa9cdc4) = -1 ENOENT (No such file or directory) open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 2203648, SEEK_SET) = 2203648 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 512) = 512 mmap2(0x7ca000, 104392, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x21a) = 0x7ca000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0\000 0\321|\0004\0\0\0"..., 104392, 2203648) = 104392 mprotect(0x7ca000, 87276, PROT_READ|PROT_EXEC) = 0 mmap2(0x7e0000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x22f) = 0x7e0000 mmap2(0x7e2000, 6088, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_ANONYMOUS, -1, 0) = 0x7e2000 close(3) = 0 open("/home/user/Desktop/icoFoam-static", O_RDONLY) = 3 lseek(3, 2453504, SEEK_SET) = 2453504 read(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 512) = 512 mmap2(0x74ad000, 12420, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS|MAP_DENYWRITE, -1, 0x257) = 0x74ad000 pread64(3, "\177ELF\1\1\1\0\0\0\0\0\0\0\0\0\3\0\3\0\1\0\0 \0 \332J\0074\0\0\0"..., 12420, 2453504) = 12420 mprotect(0x74ad000, 6148, PROT_READ|PROT_EXEC) = 0 mmap2(0x74af000, 8192, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_FIXED|MAP_DENYWRITE, 3, 0x258) = 0x74af000 close(3) = 0 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d74000 mmap2(NULL, 4096, PROT_READ|PROT_WRITE, MAP_PRIVATE|MAP_ANONYMOUS, -1, 0) = 0xb6d73000 set_thread_area({entry_number:-1 -> 6, base_addr:0xb6d738e0, limit:1048575, seg_32bit:1, contents:0, read_exec_only:0, limit_in_pages:1, seg_not_present:0, useable:1}) = 0 mprotect(0x74af000, 4096, PROT_READ) = 0 mprotect(0x7e0000, 4096, PROT_READ) = 0 mprotect(0xb6daa000, 4096, PROT_READ) = 0 mprotect(0xb6e1e000, 4096, PROT_READ) = 0 mprotect(0xb6e97000, 4096, PROT_READ) = 0 mprotect(0xa06000, 8192, PROT_READ) = 0 mprotect(0xa73000, 4096, PROT_READ) = 0 mprotect(0xa35000, 4096, PROT_READ) = 0 mprotect(0xb71bb000, 16384, PROT_READ) = 0 mprotect(0xa3c000, 4096, PROT_READ) = 0 mprotect(0x89f000, 4096, PROT_READ) = 0 set_tid_address(0xb6d73928) = 27214 set_robust_list(0xb6d73930, 0xc) = 0 futex(0xbfa9ddd0, FUTEX_WAKE_PRIVATE, 1) = 0 rt_sigaction(SIGRTMIN, {0xa622c0, [], SA_SIGINFO}, NULL, 8) = 0 rt_sigaction(SIGRT_1, {0xa62700, [], SA_RESTART|SA_SIGINFO}, NULL, 8) = 0 rt_sigprocmask(SIG_UNBLOCK, [RTMIN RT_1], NULL, 8) = 0 getrlimit(RLIMIT_STACK, {rlim_cur=10240*1024, rlim_max=RLIM_INFINITY}) = 0 uname({sys="Linux", node="locahost2", ...}) = 0 futex(0xb71c06dc, FUTEX_WAKE_PRIVATE, 2147483647) = 0 futex(0xb71c5848, FUTEX_WAKE_PRIVATE, 2147483647) = 0 futex(0xb71c5868, FUTEX_WAKE_PRIVATE, 2147483647) = 0 brk(0) = 0x119cb000 brk(0x119ec000) = 0x119ec000 stat64("/root/.OpenFOAM", 0xbfa9da74) = -1 ENOENT (No such file or directory) --- SIGSEGV (Segmentation fault) @ 0 (0) --- +++ killed by SIGSEGV +++ Once again, thank you all for your help. This is way beyond my level of expertise. |
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September 2, 2008, 15:07 |
When packaging executable you
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#18 |
New Member
Valery Reznic
Join Date: Mar 2009
Posts: 9
Rep Power: 17 |
When packaging executable you can try to add flag --with-nss='internal' and when you run packed executable run it with LD_LIBRARY_PATH unset, i.e something like
env -uLD_LIBRARY_PATH your_program.ermine |
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September 2, 2008, 16:21 |
On the local computer, I ran
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#19 |
New Member
David Herzfeld
Join Date: Mar 2009
Posts: 11
Rep Power: 17 |
On the local computer, I ran
./ErmineLight.i386 icoFoam -ld_library_path=$LD_LIBRARY_PATH --with-nss='internal' --output=icoFoam-static I then ran: env -u LD_LIBRARY_PATH icoFoam-static All features here work correctly. Running the same command on the remote computer once again results in a segmentation fault. |
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September 2, 2008, 16:55 |
OF needs a global startup file
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#20 |
Senior Member
Mattijs Janssens
Join Date: Mar 2009
Posts: 1,419
Rep Power: 26 |
OF needs a global startup file, controlDict. Copy $WM_PROJECT_DIR/etc to the directory of the user on the remote machine such that the user has a ~/.OpenFOAM/1.5/controlDict.
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