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July 14, 2013, 22:44 |
simpleFoam in parallel issue
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#1 |
Senior Member
Anonymous
Join Date: Dec 2011
Location: USA
Posts: 108
Rep Power: 14 |
I am working on getting my cases to work in parallel. I use simpleFoam mostly which cannot seem to get to run in parallel. I run my cases using ./Allrun command. Can you all look to see what I am missing. snappyHexMesh runs just fine in parallel so I do not know why simpleFoam will not.
This is my Allrun file Code:
#!/bin/sh cd ${0%/*} || exit 1 # run from this directory # Source tutorial run functions . $WM_PROJECT_DIR/bin/tools/RunFunctions cp -r 0.org 0 > /dev/null 2>&1 runApplication blockMesh cp system/decomposeParDict.hierarchical system/decomposeParDict runApplication decomposePar cp system/decomposeParDict.ptscotch system/decomposeParDict runParallel snappyHexMesh 8 -overwrite -parallel find . -type f -iname "*level*" -exec rm {} \; ls -d processor* | xargs -i cp -r 0.org/* ./{}/0/ $1 runParallel renumberMesh 8 -overwrite runApplication potentialFoam -noFunctionObjects -writep runParallel `getApplication` 8 runApplication reconstructParMesh -constant runApplication reconstructPar -latestTime # ----------------------------------------------------------------- end-of-file Code:
/*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.1.1 | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : 2.1.1-221db2718bbb Exec : simpleFoam -parallel Date : Jul 14 2013 Time : 19:09:54 Host : "hancha-desktop" PID : 2485 Case : /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike nProcs : 8 Slaves : 7 ( "hancha-desktop.2486" "hancha-desktop.2487" "hancha-desktop.2488" "hancha-desktop.2489" "hancha-desktop.2490" "hancha-desktop.2491" "hancha-desktop.2492" ) Pstream initialized with: floatTransfer : 0 nProcsSimpleSum : 0 commsType : nonBlocking sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Disallowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create mesh for time = 0 Reading field p [1] [1] [1] --> FOAM FATAL IO ERROR: [1] keyword procBoundary1to7 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor1/0/p::boundaryField" [1] [1] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor1/0/p::boundaryField from line 27 to line 16. [1] [1] From function dictionary::subDict(const word& keyword) const [1] in file db/dictionary/dictionary.C at line 461. [1] FOAM parallel run exiting [1] [4] [4] [4] --> FOAM FATAL IO ERROR: [4] keyword procBoundary4to5 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor4/0/p::boundaryField" [4] [4] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor4/0/p::boundaryField from line 27 to line 16. [4] [4] From function dictionary::subDict(const word& keyword) const [4] in file db/dictionary/dictionary.C at line 461. [4] FOAM parallel run exiting [4] [0] [0] [0] --> FOAM FATAL IO ERROR: [0] keyword procBoundary0to1 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor0/0/p::boundaryField" [0] [0] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor0/0/p::boundaryField from line 27 to line 16. [0] [0] From function dictionary::subDict(const word& keyword) const [0] in file db/dictionary/dictionary.C at line 461. [0] FOAM parallel run exiting [0] -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 1. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [5] [5] [5] --> FOAM FATAL IO ERROR: [5] keyword procBoundary5to4 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor5/0/p::boundaryField" [5] [5] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor5/0/p::boundaryField from line 27 to line 16. [5] [5] From function dictionary::subDict(const word& keyword) const [5] in file db/dictionary/dictionary.C at line 461. [5] FOAM parallel run exiting [5] [7] [7] [7] --> FOAM FATAL IO ERROR: [7] keyword procBoundary7to1 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor7/0/p::boundaryField" [7] [7] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor7/0/p::boundaryField from line 27 to line 16. [7] [7] [2] [2] [2] --> FOAM FATAL IO ERROR: [2] keyword procBoundary2to7 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor2/0/p::boundaryField" [2] [2] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor2/0/p::boundaryField from line 27 to line 16 From function dictionary::subDict(const word& keyword) const [7] in file db/dictionary/dictionary.C at line 461. [7] FOAM parallel run exiting [7] . [2] [2] From function dictionary::subDict(const word& keyword) const [2] in file db/dictionary/dictionary.C at line 461. [2] FOAM parallel run exiting [2] [3] [3] [3] --> FOAM FATAL IO ERROR: [3] keyword procBoundary3to7 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor3/0/p::boundaryField" [3] [3] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor3/0/p::boundaryField from line 27 to line 16. [3] [3] From function dictionary::subDict(const word& keyword) const [3] in file db/dictionary/dictionary.C at line 461. [3] FOAM parallel run exiting [3] [6] [6] [6] --> FOAM FATAL IO ERROR: [6] keyword procBoundary6to4 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor6/0/p::boundaryField" [6] [6] file: /home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor6/0/p::boundaryField from line 27 to line 16. [6] [6] From function dictionary::subDict(const word& keyword) const [6] in file db/dictionary/dictionary.C at line 461. [6] FOAM parallel run exiting [6] -------------------------------------------------------------------------- mpirun has exited due to process rank 1 with PID 2486 on node hancha-desktop exiting without calling "finalize". This may have caused other processes in the application to be terminated by signals sent by mpirun (as reported here). -------------------------------------------------------------------------- [hancha-desktop:02484] 7 more processes have sent help message help-mpi-api.txt / mpi-abort [hancha-desktop:02484] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages |
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July 14, 2013, 23:49 |
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#2 |
Senior Member
Mohammad Shakil Ahmmed
Join Date: Oct 2012
Location: AUS
Posts: 137
Rep Power: 14 |
The error message says that "keyword procBoundary1to7 is undefined in dictionary "/home/hancha/OpenFOAM/hancha-2.1.1/run/transient/motorBike/processor1/0/p::boundaryField"" .
Have you checked your p boundary??? |
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July 15, 2013, 10:21 |
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#3 | |
Senior Member
Anonymous
Join Date: Dec 2011
Location: USA
Posts: 108
Rep Power: 14 |
Quote:
When I check in processorX/constant/polyMesh/boundary I have a procBoundary1to7. Do I need to call all of these out in my p boundary? boundary file Code:
/*--------------------------------*- C++ -*----------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.1.1 | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ FoamFile { version 2.0; format ascii; class polyBoundaryMesh; location "constant/polyMesh"; object boundary; } // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // 15 ( frontAndBack { type patch; nFaces 0; startFace 1273919; } inlet { type patch; nFaces 0; startFace 1273919; } outlet { type patch; nFaces 0; startFace 1273919; } lowerWall { type wall; nFaces 298; startFace 1273919; } upperWall { type patch; nFaces 0; startFace 1274217; } body { type wall; nFaces 64359; startFace 1274217; } fwing { type wall; nFaces 55822; startFace 1338576; } wheel_fr { type wall; nFaces 0; startFace 1394398; } wheel_fl { type wall; nFaces 0; startFace 1394398; } wheel_rr { type wall; nFaces 0; startFace 1394398; } wheel_rl { type wall; nFaces 0; startFace 1394398; } procBoundary1to7 { type processor; nFaces 1182; startFace 1394398; matchTolerance 0.0001; myProcNo 1; neighbProcNo 7; } procBoundary1to0 { type processor; nFaces 2580; startFace 1395580; matchTolerance 0.0001; myProcNo 1; neighbProcNo 0; } procBoundary1to2 { type processor; nFaces 3052; startFace 1398160; matchTolerance 0.0001; myProcNo 1; neighbProcNo 2; } procBoundary1to3 { type processor; nFaces 481; startFace 1401212; matchTolerance 0.0001; myProcNo 1; neighbProcNo 3; } ) // ************************************************************************* // |
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July 17, 2013, 11:30 |
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#4 |
Senior Member
Anonymous
Join Date: Dec 2011
Location: USA
Posts: 108
Rep Power: 14 |
Any other ideas? I know plenty of people run cases in parallel
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