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ABL use of fixed shear stress leads to segmentation fault 11

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Old   March 3, 2016, 02:45
Default ABL use of fixed shear stress leads to segmentation fault 11
  #1
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Christof Schmidt
Join Date: Nov 2015
Posts: 6
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cristopf is on a distinguished road
Hi everybody,

I have a case where I use the ABL and want to set a fixed shear stress at the top boundary like Hargreaves and Wright recommend. So I use the "libturbulenceDerivedFvPatchFields.so" in the control dict and in 0/U I choose the type fixedShearStress for the top boundary.
When I run the solver (simpleFoam) it stops at once and I got a segmentation fault 11.
I know itīs not much information but I donīt find out where the problem could be that causes this fault.
Perhaps anyone can give me some hints or had the same problem with the fixed shear stress.

Thank you!

mpirun -np 8 simpleFoam -parallel > log&
[1] 31617
]0;pwacker@SRV02: ~/OpenFOAM/pwacker-2.2.2/Testrechnungen/VergleichZ0Ks/z0MovingWallFSSpwacker@SRV02:~/OpenFOAM/pwacker-2.2.2/Testrechnungen/VergleichZ0Ks/z0MovingWallF
FSS$ [1] #0 [2] #0 [3] #0 [4] #0 [5] #0 [7] #0 Foam::error::printStack(Foam::Ostream&)Foam::error ::printStack(Foam::Ostream&)Foam::error::printStac k(Foam::Ostream&)Foam::error::printStack(Foam::Ost ream&)[6] #0 Foam::error::printStack(Foam::Ostream&)Foam::error ::printStack(Foam::Ostream&)Foam::error::printStac k(Foam::Ostream&)[0] #0 Foam::error::printStack(Foam::Ostream&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #1 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[2] #1 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #1 Foam::sigSegv::sigHandler(int)Foam::sigSegv::sigHa ndler(int)Foam::sigSegv::sigHandler(int) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[4] #1 Foam::sigSegv::sigHandler(int) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linuGccDPOpt/lib/libOpenFOAM.so"
[7] #1[5] #1 Foam::sigSegv::sigHandler(int)
[3] #1 x64GccDPOpt/lib/libOpenFOAM.so"
[6] #1 Foam::sigSegv::sigHandler(int)Foam::sigSegv::sigHa ndler(int) Foam::sigSegv::sigHandler(int) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] # in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[2] #2 2 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[4] #2 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #2 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/ in "/home/lhoang/OpenFOAM/OpenFOAM-2.2lib/libOpenFOAM.so"
[5] #2 .2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so" in "/h in "/home/lhoa
[7] #2 ng/OpenFOAM/OpenFOAM-2ome/lhoang/OpenFOAM/OpenFOAM-2.2.2/.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
so"
[3] #2 [6] #2 in "/lib/x86_64-linux-gnu/libc.so.6"
[1] #3 Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&) in "/lib/x86_64-linux-gnu/libc.so.6"
[2] #3 Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&) in "/lib/x86_64-linux-gnu/libc.so.6"
[4] #3 Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&) in "/lib/x86_64-linux-gn in "/lib/x86_64-linux-gnu/l in "/lib/x86_64-linux-gnu/libc.s in "/lib/x86_64-linux-gnu/libc.so.6" in "/lib/x86_64-linux-gnu/libc.so.6"
[0] #3 u/libc.so.6"
[6] #3 ibc.so.6"
[7] #o.6"
[5] #3
[3] #3 Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&)Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&)Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&)3 Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&) Foam::multiply(Foam::Field<double>&, Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[2] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[5] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[3] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[4] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[0] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
in "/home/lhoa[7] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&)ng/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[6] #4 Foam::operator*(Foam::UList<double> const&, Foam::UList<double> const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[4] #5 Foam::fixedShearStressFvPatchVectorField::updateCo effs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[1] #5 Foam::fixedShearStressFvPatchVectorField::updateCo effs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[7] #5 Foam::fixedShearStressFvPatchVectorField::updateCo effs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so in "/home/lhoa"
[0] #5 Foam::fixedShearStressFvPatchVectorField::updateCo effs()ng/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[3] #5 in "/hFoam::fixedShearStressFvPatchVectorField::updateC oeffs()ome/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[5] #5 Foam::fixedShearStressFvPatchVectorField::updateCo effs() in "/home/lhoang/OpenFOAM/OpenF in "/home/lhoang/OpeOAM-2.2.2/platforms/linux64GccDPOpt/libnFOAM/OpenFOAM-2.2.2/platforms/linu/libOpenFOAM.so"
[2] #5 x64GccDPOpt/lib/libturbulenceDerivedFoam::fixedShearStressFvPatchV ectorField::updateCoeffs()FvPatchFields.so"
[4] #6 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so"
[6] #5 Foam::fixedShearStressFvPatchVectorField::updateCo effs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so"
[7] #6 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so"
[1] #6 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so"
[3] #6 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDer ivedFvPatchFields.so"
[5] #6 Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so"
[0] #6 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so"
[2] #6 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so"
[6] #6 Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs()Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs()Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs()Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[4] #7 Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs()Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs()Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>::GeometricBoundaryField::updateCoef fs() in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[7] #7 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[1] #7 Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #7 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[5] #7 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #7 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[2] #7 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[6] #7 Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&)Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&) in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[4] #8 Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&)Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&)Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&)Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&)Foam::fvMatrix<Foam::Vector<double> >::fvMatrix(Foam::GeometricField<Foam::Vector<doub le>, Foam::fvPatchField, Foam::volMesh> const&, Foam::dimensionSet const&)
in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #8 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[7] #8 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[6] #8 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[1] #8 [4] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[4] #9 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[2] #8 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[5] #8 in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #8







[0] [4] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[4] #10 __libc_start_main[7] in "/home/lhoang/OpenFOAM in "/home/lhoang/OpenFOAM/OpenFOA/OpenFOAM-2.2.2/platforms/M-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #9 linux64GccDPOpt/bin/simpleFoam"
[7] #9 [5] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[5] #9 [6] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[6] #9 [1] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[1] #9 [2] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[2] #9
[3] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #9
in "/lib/x86_64-linux-gnu/libc.so.6"
[4] #11





[0] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[0] #10 __libc_start_main[7] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[7] #10 __libc_start_main[2] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[2] #10 __libc_start_main[6] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[6] #10 __libc_start_main[1] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[1] #[5] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/li10 __libc_start_mainnux64GccDPOpt/bin/simpleFoam"
[5] #10 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6"
[0] #11 [3] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[3] #10 __libc_start_main in "/lib/x86_64-linux-gnu/libc.so.6"
[7] #11 [4] in "/home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/bin/simpleFoam"
[SRV02:31622] *** Process received signal ***
[SRV02:31622] Signal: Segmentation fault (11)
[SRV02:31622] Signal code: (-6)
[SRV02:31622] Failing at address: 0x3ec00007b86
[SRV02:31622] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x324f0) [0x7f7a51b3f4f0]
[SRV02:31622] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35) [0x7f7a51b3f475]
[SRV02:31622] [ 2] /lib/x86_64-linux-gnu/libc.so.6(+0x324f0) [0x7f7a51b3f4f0]
[SRV02:31622] [ 3] /home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4Foam8multiplyERNS_5FieldIdEERKN S_5UListIdEES6_+0x78) [0x7f7a52d4e7d8]
[SRV02:31622] [ 4] /home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libOpenFOAM.so(_ZN4FoammlERKNS_5UListIdEES3_+0x71) [0x7f7a52d52d11]
[SRV02:31622] [ 5] /home/lhoang/OpenFOAM/OpenFOAM-2.2.2/platforms/linux64GccDPOpt/lib/libturbulenceDerivedFvPatchFields.so(_ZN4Foam34fix edShearStressFvPatchVectorField12updateCoeffsEv+0x 2b2) [0x7f7a3ec22ab2]
[SRV02:31622] [ 6] simpleFoam(_ZN4Foam14GeometricFieldINS_6VectorIdEE NS_12fvPatchFieldENS_7volMeshEE22GeometricBoundary Field12updateCoeffsEv+0x3d) [0x4369dd]
[SRV02:31622] [ 7] simpleFoam(_ZN4Foam8fvMatrixINS_6VectorIdEEEC1ERKN S_14GeometricFieldIS2_NS_12fvPatchFieldENS_7volMes hEEERKNS_12dimensionSetE+0x383) [0x43f143]
[SRV02:31622] [ 8] simpleFoam() [0x43f264]
[SRV02:31622] [ 9] simpleFoam() [0x426ca7]
[SRV02:31622] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xfd) [0x7f7a51b2bead]
[SRV02:31622] [11] simpleFoam() [0x428d4d]
[SRV02:31622] *** End of error message ***
in "/lib/x86_64-linux-gnu/libc.so.6"
[2] #11 in "/lib/x86_64-linux-gnu/libc.so.6"
[6] #11 in "/lib/x86_64-linux-gnu/libc.so.6"
[1] #11
in "/lib/x86_64-linux-gnu/libc.so.6"
[5] #11
--------------------------------------------------------------------------
mpirun noticed that process rank 4 with PID 31622 on node SRV02 exited on signal 11 (Segmentation fault).
--------------------------------------------------------------------------
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Old   December 23, 2016, 16:57
Default
  #2
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Jie (Jay) Zhang
Join Date: Sep 2010
Location: Phoenix, AZ, U.S.
Posts: 28
Rep Power: 15
jiez is on a distinguished road
Hi Christof, have you fixed the issue? How did you fix it?

Best,

Jie
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