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hwloc encountered an error during parallel run on my cluster

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Old   December 18, 2018, 15:54
Default hwloc encountered an error during parallel run on my cluster
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Tobias Holzmann
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Hi all,



after a while, I reactivated my cluster and I realized that I get the following error while running snappyHexMesh in parallel:
Code:
cfd@OpenFOAM:~/OpenFOAM/cfd-dev/run/Columbia/detailedCFDAnalysis$ mpirun -np 20 snappyHexMesh -parallel 
****************************************************************************
* hwloc 1.11.2 has encountered what looks like an error from the operating system.
*
* L3 (cpuset 0x000003f0) intersects with NUMANode (P#0 cpuset 0x0000003f) without inclusion!
* Error occurred in topology.c line 1046
*
* The following FAQ entry in the hwloc documentation may help:
*   What should I do when hwloc reports "operating system" warnings?
* Otherwise please report this error message to the hwloc user's mailing list,
* along with the output+tarball generated by the hwloc-gather-topology script.
****************************************************************************
/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     | Website:  https://openfoam.org
    \\  /    A nd           | Version:  dev
     \\/     M anipulation  |
\*---------------------------------------------------------------------------*/
Build  : dev-adea51c53ccb
Exec   : snappyHexMesh -parallel
Date   : Dec 18 2018
Time   : 21:49:53
Host   : "OpenFOAM"
PID    : 2091
I/O    : uncollated
Case   : /home/cfd/OpenFOAM/cfd-dev/run/Gibraltar/detailedCFDAnalysis
nProcs : 20
Slaves : 
19
(
"OpenFOAM.2092"
"OpenFOAM.2093"
"OpenFOAM.2094"
"OpenFOAM.2095"
"OpenFOAM.2096"
"OpenFOAM.2097"
"OpenFOAM.2098"
"OpenFOAM.2099"
"OpenFOAM.2100"
"OpenFOAM.2101"
"OpenFOAM.2102"
"OpenFOAM.2103"
"OpenFOAM.2104"
"OpenFOAM.2105"
"OpenFOAM.2106"
"OpenFOAM.2107"
"OpenFOAM.2108"
"OpenFOAM.2109"
"OpenFOAM.2110"
)

Pstream initialized with:
    floatTransfer      : 0
    nProcsSimpleSum    : 0
    commsType          : nonBlocking
    polling iterations : 0
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10)
allowSystemOperations : Allowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
However, the meshing application is running and everything seems fine but I don't know if I have to take the error serious or not. With the information given here (https://www.open-mpi.org/projects/hw...1.3/a00030.php), I cannot make any statement.

Any suggestion?
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Tobias Holzmann
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