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Problems with PyFoam and batch file!

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Old   January 5, 2022, 08:57
Exclamation Problems with PyFoam and batch file!
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Alfonso Giancola
Join Date: Nov 2021
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Hello everyone! I am working with pyFoam to try to automize some of the processes that are necessary to run an OF simulation. With my team we decided to implement some pyfoam commands in a batch file. All run smooth but pyFoamCreateBoundaryPatches.py gives us errors. The commands written in the batch works properly if written in the terminal one by one, so I do not think that it is a pyfoam syntax problem. Here there are the lines of the batch till the incriminated one:

#!/bin/bash
#_________________________________________________ _____________________________________
#Cleaning the folder from the previous run
rm -rf *[1-9]*
rm -f log.*
#_________________________________________________ __________________________________________________ __________________________________________________ ___________
#"0 FOLDER" SETUP
#Setting of internal field. NOTE THAT IF ONE OR MORE OF THE FIELDS ARE NOT NECESSARIES, PUT A "#" BEFORE THE "pyFoamWriteDictionary.py" STRING
pyFoamWriteDictionary.py --strip-quotes-from-value 0/U "internalField" "uniform (13.89 0 0)" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
pyFoamWriteDictionary.py --strip-quotes-from-value 0/p "internalField" "uniform 0" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
pyFoamWriteDictionary.py --strip-quotes-from-value 0/k "internalField" "uniform 0" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
pyFoamWriteDictionary.py --strip-quotes-from-value 0/omega "internalField" "uniform 0" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
pyFoamWriteDictionary.py --strip-quotes-from-value 0/nut "internalField" "uniform 0" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
pyFoamWriteDictionary.py --strip-quotes-from-value 0/nuTilda "internalField" "uniform 0" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
pyFoamWriteDictionary.py --strip-quotes-from-value 0/epsilon "internalField" "uniform 0" #CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
#Define boundary patches: prepared U, p, nuTilda, nut, omega, k, epsilon file REQUIRED!!
#CHANGE THE VALUES TO ADAPT AT THE CASE OF STUDY
#U
pyFoamCreateBoundaryPatches.py --default="{ ' type ':'noSlip'}" 0/U
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform (0 0 0) '}" 0/U
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform (0 0 0) '}" 0/U
#p
pyFoamCreateBoundaryPatches.py 0/p
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/p
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/p
#epsilon
pyFoamCreateBoundaryPatches.py 0/epsilon
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/epsilon
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/epsilon
#k
pyFoamCreateBoundaryPatches.py 0/k
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/k
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/k
#nuTilda
pyFoamCreateBoundaryPatches.py 0/nuTilda
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/nuTilda
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/nuTilda
#omega
pyFoamCreateBoundaryPatches.py 0/omega
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/omega
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/omega
#nut
pyFoamCreateBoundaryPatches.py 0/nut
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="inlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/nut
pyFoamCreateBoundaryPatches.py --verbose --overwrite --filter="outlet+" --default="{ ' type ':' fixedValue ','value ':' uniform 0 '}" 0/nut

While here the errors during the run of the batch file:

Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/U\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/U\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/U\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/p\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/p\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/p\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/epsilon\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/epsilon\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/epsilon\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/k\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/k\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/lib/python2.7/site-packages/PyFoam/Applications/CreateBoundaryPatches.py: Problem wi : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/k\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/nuTilda\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/nuTilda\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/nuTilda\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/omega\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/omega\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/omega\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/nut\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/nut\r.gz'' in Application-class: CreateBoundaryPatches
Error in /home/alfogianco/.local/bin/pyFoamCreateBoundaryPatches.py : FatalError in PyFoam: 'PyFoam FATAL ERROR on line 93 of file /home/alfogianco/.local/l : [Errno 2] No such file or directory: '/home/alfogianco/OpenFOAM/alfogianco-9/run/airFoil2D/0/nut\r.gz'' in Application-class: CreateBoundaryPatches


Thank you for your help, and wish you a happy new year!
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