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[OpenFOAM] Segmentation Fault on start - pvserver using o/s rendering, remote on cluster |
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June 8, 2014, 21:23 |
Segmentation Fault on start - pvserver using o/s rendering, remote on cluster
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#1 |
Member
Christian Butcher
Join Date: Jul 2013
Location: Japan
Posts: 85
Rep Power: 12 |
I have installed from source Mesa-10.1.3, QT-4.8.6, and ParaView-4.1.0, on a cluster which is accessed using password-less ssh connections. I can ssh between the nodes and that all seems to be fine.
When I start the pvserver (on the login node only, to try and simplify matters, although the same happens with the working nodes of the cluster, the connection is just a bit messier so I might be also getting that wrong), I use Code:
$>> pvserver --use-offscreen-rendering Code:
Waiting for client... Connection URL: cs://tombo-login3.oist.jp:11111 Accepting connection(s): tombo-login3.oist.jp:11111 Code:
Client connected. [tombo-login3:04882] *** Process received signal *** [tombo-login3:04882] Signal: Segmentation fault (11) [tombo-login3:04882] Signal code: Address not mapped (1) [tombo-login3:04882] Failing at address: (nil) [tombo-login3:04882] [ 0] /lib64/libpthread.so.0() [0x3d2440f710] [tombo-login3:04882] [ 1] /lib64/libc.so.6() [0x3d23c8ad96] [tombo-login3:04882] [ 2] /lib64/libc.so.6() [0x3d23c75a10] [tombo-login3:04882] [ 3] /lib64/libc.so.6(vsscanf+0x65) [0x3d23c699b5] [tombo-login3:04882] [ 4] /lib64/libc.so.6(_IO_sscanf+0x88) [0x3d23c63a28] [tombo-login3:04882] [ 5] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN25vtkOpenGLExtensionManager20ReadOpenGLExtensionsEv+0x160) [0x2b8fe10bc950] [tombo-login3:04882] [ 6] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN25vtkOpenGLExtensionManager6UpdateEv+0x30) [0x2b8fe10bbe00] [tombo-login3:04882] [ 7] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN25vtkOpenGLExtensionManager18ExtensionSupportedEPKc+0x17) [0x2b8fe10bbb47] [tombo-login3:04882] [ 8] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN21vtkOpenGLRenderWindow17OpenGLInitContextEv+0x4a) [0x2b8fe10f6a1a] [tombo-login3:04882] [ 9] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN21vtkOpenGLRenderWindow10OpenGLInitEv+0xd) [0x2b8fe10f41ed] [tombo-login3:04882] [10] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingOpenGL-pv4.1.so.1(_ZN23vtkOSOpenGLRenderWindow5StartEv+0xd) [0x2b8fe117059d] [tombo-login3:04882] [11] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow14DoStereoRenderEv+0x16) [0x2b8fd07931d6] [tombo-login3:04882] [12] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow10DoFDRenderEv+0x36b) [0x2b8fd079375b] [tombo-login3:04882] [13] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow10DoAARenderEv+0x461) [0x2b8fd0794811] [tombo-login3:04882] [14] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkRenderingCore-pv4.1.so.1(_ZN15vtkRenderWindow6RenderEv+0xcd) [0x2b8fd079388d] [tombo-login3:04882] [15] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVClientServerCoreRendering-pv4.1.so.1(_ZN15vtkPVRenderView6RenderEbb+0x20e) [0x2b8fda632ebe] [tombo-login3:04882] [16] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVClientServerCoreRendering-pv4.1.so.1(_ZN15vtkPVRenderView11StillRenderEv+0x3c) [0x2b8fda6320fc] [tombo-login3:04882] [17] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerManagerApplication-pv4.1.so.1(_Z22vtkPVRenderViewCommandP26vtkClientServerInterpreterP13vtkObjectBasePKcRK21vtkClientServerStreamRS5_Pv+0x140f) [0x2b8fcf1c114f] [tombo-login3:04882] [18] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter19CallCommandFunctionEPKcP13vtkObjectBaseS1_RK21vtkClientServerStreamRS4_+0x14c) [0x2b8fd296e72c] [tombo-login3:04882] [19] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter20ProcessCommandInvokeERK21vtkClientServerStreami+0x192) [0x2b8fd2972192] [tombo-login3:04882] [20] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter17ProcessOneMessageERK21vtkClientServerStreami+0x28e) [0x2b8fd29717ee] [tombo-login3:04882] [21] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkClientServer-pv4.1.so.1(_ZN26vtkClientServerInterpreter13ProcessStreamERK21vtkClientServerStream+0x1d) [0x2b8fd29718dd] [tombo-login3:04882] [22] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN16vtkPVSessionCore21ExecuteStreamInternalERK21vtkClientServerStreamb+0x10c) [0x2b8fcfc9420c] [tombo-login3:04882] [23] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN16vtkPVSessionCore13ExecuteStreamEjRK21vtkClientServerStreamb+0x4c) [0x2b8fcfc90b7c] [tombo-login3:04882] [24] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN16vtkPVSessionBase13ExecuteStreamEjRK21vtkClientServerStreamb+0x42) [0x2b8fcfc8e6c2] [tombo-login3:04882] [25] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVServerImplementationCore-pv4.1.so.1(_ZN18vtkPVSessionServer24OnClientServerMessageRMIEPvi+0x143) [0x2b8fcfc97533] [tombo-login3:04882] [26] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkParallelCore-pv4.1.so.1(_ZN25vtkMultiProcessController10ProcessRMIEiPvii+0x168) [0x2b8fd3513108] [tombo-login3:04882] [27] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkParallelCore-pv4.1.so.1(_ZN25vtkMultiProcessController11ProcessRMIsEii+0x101) [0x2b8fd35135b1] [tombo-login3:04882] [28] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/libvtkPVClientServerCoreCore-pv4.1.so.1(_ZN26vtkTCPNetworkAccessManager21ProcessEventsInternalEmb+0x35e) [0x2b8fcff887be] [tombo-login3:04882] [29] /imports/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/pvserver(main+0x21b) [0x401c4b] [tombo-login3:04882] *** End of error message *** Segmentation fault Code:
christian-butcher@tombo-login3:~$ echo $PATH /home/c/christian-butcher/Tombo3_SL6.5/bin:/home/c/christian-butcher/Tombo3_SL6.5/QT-4.8.6/bin:/home/c/christian-butcher/OpenFOAM/christian-butcher-2.3.0/platforms/linux64GccDPOpt/bin:/home/c/christian-butcher/OpenFOAM/site/2.3.0/platforms/linux64GccDPOpt/bin:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/bin:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/bin:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/wmake:/opt/mpi/gnu/openmpi-1.6.3/bin:/gridware/sge/bin/lx24-amd64:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin christian-butcher@tombo-login3:~$ echo $LD_LIBRARY_PATH /home/c/christian-butcher/Tombo3_SL6.5/lib:/home/c/christian-butcher/Tombo3_SL6.5/QT-4.8.6/lib/:/home/c/christian-butcher/Tombo3_SL6.5/lib/paraview-4.1/:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/openmpi-system:/home/c/christian-butcher/OpenFOAM/ThirdParty-2.3.0/platforms/linux64GccDPOpt/lib/openmpi-system:/opt/mpi/gnu/openmpi-1.6.3/lib:/home/c/christian-butcher/OpenFOAM/christian-butcher-2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/site/2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/ThirdParty-2.3.0/platforms/linux64GccDPOpt/lib:/home/c/christian-butcher/OpenFOAM/OpenFOAM-2.3.0/platforms/linux64GccDPOpt/lib/dummy If anyone could advise, I'd very much appreciate it. If any further information is needed, please let me know. Christian |
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Tags |
cluster, paraview 4.1.0, pvserver, segmentation fault |
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