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[OpenFOAM] ParaFoam closes when loading a mesh

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Old   November 16, 2022, 10:50
Default ParaFoam closes when loading a mesh
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Join Date: Feb 2021
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finzeo is on a distinguished road
Hi all,

I am using OpenFOAM only to create a mesh (using blockmesh and snappyhexmesh), to simulate the flow around a vehicle, in other software (code_saturne), using FVM. It is a mesh of around 40 million cells. I would like to be able to visualize the mesh using ParaFoam (or Paraview), prior to running the case in code_saturne.

The problem is that when I run ParaFoam (or Paraview, loading the *.foam file), during the case loading process it exits, either from my own pc or from a server with a lot of RAM (in case that this was the cause). I did the latter since I have NO problems seeing a mesh of about 10 million cells on that server, but crashes with de 40 M cells mesh.

I show four messages: using Paraview or ParaFoam in my PC and in the remote server.

When using paraview from a local computer:

Quote:
Gtk-Message: 12:23:02.923: Failed to load module "canberra-gtk-module"
AutoMPI: SUCCESS: command is:
"/usr/bin/mpiexec" "-np" "4" "/usr/lib/paraview/pvserver" "--server-port=41909"
AutoMPI: starting process server
-------------- server output --------------
Waiting for client...
AutoMPI: server successfully started.
ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/ParaViewCore/ServerManager/Core/vtkSMSessionClient.cxx, line 786
vtkSMSessionClient (0x55f2b9054df0): Server failed to gather information.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

ERROR: In /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Common/System/vtkSocket.cxx, line 572
vtkClientSocket (0x55f2b9b06540): Socket error in call to send. Tubería rota.

paraview: /build/paraview-lH8wFv/paraview-5.4.1+dfsg3/VTK/Parallel/Core/vtkMultiProcessStream.cxx:777: vtkMultiProcessStream& vtkMultiProcessStream:perator>>(std::__cxx11::st ring&): La declaración `this->Internals->Data.front() == vtkInternals::string_value' no se cumple.
Abortado (`core' generado)
When using paraFoam from a local computer:

Quote:
Segmentation fault (core dumped)
When using paraview from the server:

Quote:
[cluster62:154162] *** Process received signal ***
[cluster62:154162] Signal: Violaci�n de segmento (11)
[cluster62:154162] Signal code: Address not mapped (1)
[cluster62:154162] Failing at address: 0x6a69000
[cluster62:154162] [ 0] /lib64/libpthread.so.0[0x3d8ac0f7e0]
[cluster62:154162] [ 1] /lib64/libc.so.6(memcpy+0x28a)[0x3d8a0899aa]
[cluster62:154162] [ 2] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x149788)[0x7eff71f3e788]
[cluster62:154162] [ 3] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x14b091)[0x7eff71f40091]
[cluster62:154162] [ 4] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x12a004)[0x7eff71f1f004]
[cluster62:154162] [ 5] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x13d146)[0x7eff71f32146]
[cluster62:154162] [ 6] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(_ZN17vtkOpenFOAMReader11RequestDataEP14 vtkInformationPP20vtkInformationVectorS3_+0x5cf)[0x7eff71f34c4d]
[cluster62:154162] [ 7] /share/apps/paraview/5.6.0/lib/libvtkIOParallel-pv5.6.so.1(_ZN18vtkPOpenFOAMReader11RequestDataEP1 4vtkInformationPP20vtkInformationVectorS3_+0x55)[0x7eff72844ec3]
[cluster62:154162] [ 8] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN29vtkMultiBlockDataSetAlgorithm14Pro cessRequestEP14vtkInformationPP20vtkInformationVec torS3_+0xa1)[0x7eff69b7de61]
[cluster62:154162] [ 9] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN12vtkExecutive13CallAlgorithmEP14vtk InformationiPP20vtkInformationVectorS3_+0x83)[0x7eff69b64ee9]
[cluster62:154162] [10] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline11ExecuteDa taEP14vtkInformationPP20vtkInformationVectorS3_+0x 67)[0x7eff69b5d0b9]
[cluster62:154162] [11] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN24vtkCompositeDataPipeline11ExecuteD ataEP14vtkInformationPP20vtkInformationVectorS3_+0 x492)[0x7eff69b53258]
[cluster62:154162] [12] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline14ProcessRe questEP14vtkInformationPP20vtkInformationVectorS3_ +0x46b)[0x7eff69b5c7e7]
[cluster62:154162] [13] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline14 ProcessRequestEP14vtkInformationPP20vtkInformation VectorS3_+0x932)[0x7eff69b9f33c]
[cluster62:154162] [14] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN24vtkCompositeDataPipeline15ForwardU pstreamEP14vtkInformation+0x2d8)[0x7eff69b5592e]
[cluster62:154162] [15] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline14ProcessRe questEP14vtkInformationPP20vtkInformationVectorS3_ +0x3da)[0x7eff69b5c756]
[cluster62:154162] [16] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline14 ProcessRequestEP14vtkInformationPP20vtkInformation VectorS3_+0x932)[0x7eff69b9f33c]
[cluster62:154162] [17] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline10UpdateDat aEi+0x315)[0x7eff69b5cf15]
[cluster62:154162] [18] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline6U pdateEiP20vtkInformationVector+0x172)[0x7eff69b9f64a]
[cluster62:154162] [19] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline6U pdateEi+0x30)[0x7eff69b9f4d6]
[cluster62:154162] [20] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkSISourceProxy14UpdatePipelineEi db+0x1b8)[0x7eff79876b94]
[cluster62:154162] [21] /share/apps/paraview/5.6.0/lib/libvtkPVServerManagerApplication-pv5.6.so.1(_Z23vtkSISourceProxyCommandP26vtkClient ServerInterpreterP13vtkObjectBasePKcRK21vtkClientS erverStreamRS5_Pv+0x712)[0x7eff7ce34082]
[cluster62:154162] [22] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter19CallCo mmandFunctionEPKcP13vtkObjectBaseS1_RK21vtkClientS erverStreamRS4_+0x315)[0x7eff778f786f]
[cluster62:154162] [23] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter20Proces sCommandInvokeERK21vtkClientServerStreami+0x1c5)[0x7eff778f6043]
[cluster62:154162] [24] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter17Proces sOneMessageERK21vtkClientServerStreami+0x135)[0x7eff778f564d]
[cluster62:154162] [25] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter13Proces sStreamERK21vtkClientServerStream+0x2f)[0x7eff778f54e7]
[cluster62:154162] [26] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkPVSessionCore21ExecuteStreamInt ernalERK21vtkClientServerStreamb+0xde)[0x7eff798292d4]
[cluster62:154162] [27] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkPVSessionCore13ExecuteStreamEjR K21vtkClientServerStreamb+0x1f5)[0x7eff798290d3]
[cluster62:154162] [28] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkPVSessionBase13ExecuteStreamEjR K21vtkClientServerStreamb+0x5a)[0x7eff79825700]
[cluster62:154162] [29] /share/apps/paraview/5.6.0/lib/libvtkPVServerManagerCore-pv5.6.so.1(_ZN10vtkSMProxy13ExecuteStreamERK21vtkC lientServerStreambj+0xaa)[0x7eff79cf9ad6]
[cluster62:154162] *** End of error message ***
Violaci�n de segmento
When using paraFoam from the server:

Quote:
[cluster62:147975] *** Process received signal ***
[cluster62:147975] Signal: Segmentation fault (11)
[cluster62:147975] Signal code: Address not mapped (1)
[cluster62:147975] Failing at address: 0x7746000
[cluster62:147975] [ 0] /lib64/libpthread.so.0[0x3d8ac0f7e0]
[cluster62:147975] [ 1] /lib64/libc.so.6(memcpy+0x292)[0x3d8a0899b2]
[cluster62:147975] [ 2] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x149788)[0x7f91117fb788]
[cluster62:147975] [ 3] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x14b091)[0x7f91117fd091]
[cluster62:147975] [ 4] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x12a004)[0x7f91117dc004]
[cluster62:147975] [ 5] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(+0x13d146)[0x7f91117ef146]
[cluster62:147975] [ 6] /share/apps/paraview/5.6.0/lib/libvtkIOGeometry-pv5.6.so.1(_ZN17vtkOpenFOAMReader11RequestDataEP14 vtkInformationPP20vtkInformationVectorS3_+0x5cf)[0x7f91117f1c4d]
[cluster62:147975] [ 7] /share/apps/paraview/5.6.0/lib/libvtkIOParallel-pv5.6.so.1(_ZN18vtkPOpenFOAMReader11RequestDataEP1 4vtkInformationPP20vtkInformationVectorS3_+0x55)[0x7f9112101ec3]
[cluster62:147975] [ 8] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN29vtkMultiBlockDataSetAlgorithm14Pro cessRequestEP14vtkInformationPP20vtkInformationVec torS3_+0xa1)[0x7f9109439e61]
[cluster62:147975] [ 9] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN12vtkExecutive13CallAlgorithmEP14vtk InformationiPP20vtkInformationVectorS3_+0x83)[0x7f9109420ee9]
[cluster62:147975] [10] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline11ExecuteDa taEP14vtkInformationPP20vtkInformationVectorS3_+0x 67)[0x7f91094190b9]
[cluster62:147975] [11] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN24vtkCompositeDataPipeline11ExecuteD ataEP14vtkInformationPP20vtkInformationVectorS3_+0 x492)[0x7f910940f258]
[cluster62:147975] [12] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline14ProcessRe questEP14vtkInformationPP20vtkInformationVectorS3_ +0x46b)[0x7f91094187e7]
[cluster62:147975] [13] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline14 ProcessRequestEP14vtkInformationPP20vtkInformation VectorS3_+0x932)[0x7f910945b33c]
[cluster62:147975] [14] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN24vtkCompositeDataPipeline15ForwardU pstreamEP14vtkInformation+0x2d8)[0x7f910941192e]
[cluster62:147975] [15] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline14ProcessRe questEP14vtkInformationPP20vtkInformationVectorS3_ +0x3da)[0x7f9109418756]
[cluster62:147975] [16] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline14 ProcessRequestEP14vtkInformationPP20vtkInformation VectorS3_+0x932)[0x7f910945b33c]
[cluster62:147975] [17] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN23vtkDemandDrivenPipeline10UpdateDat aEi+0x315)[0x7f9109418f15]
[cluster62:147975] [18] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline6U pdateEiP20vtkInformationVector+0x172)[0x7f910945b64a]
[cluster62:147975] [19] /share/apps/paraview/5.6.0/lib/libvtkCommonExecutionModel-pv5.6.so.1(_ZN32vtkStreamingDemandDrivenPipeline6U pdateEi+0x30)[0x7f910945b4d6]
[cluster62:147975] [20] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkSISourceProxy14UpdatePipelineEi db+0x1b8)[0x7f9119132b94]
[cluster62:147975] [21] /share/apps/paraview/5.6.0/lib/libvtkPVServerManagerApplication-pv5.6.so.1(_Z23vtkSISourceProxyCommandP26vtkClient ServerInterpreterP13vtkObjectBasePKcRK21vtkClientS erverStreamRS5_Pv+0x712)[0x7f911c6f1082]
[cluster62:147975] [22] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter19CallCo mmandFunctionEPKcP13vtkObjectBaseS1_RK21vtkClientS erverStreamRS4_+0x315)[0x7f91171b386f]
[cluster62:147975] [23] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter20Proces sCommandInvokeERK21vtkClientServerStreami+0x1c5)[0x7f91171b2043]
[cluster62:147975] [24] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter17Proces sOneMessageERK21vtkClientServerStreami+0x135)[0x7f91171b164d]
[cluster62:147975] [25] /share/apps/paraview/5.6.0/lib/libvtkClientServer-pv5.6.so.1(_ZN26vtkClientServerInterpreter13Proces sStreamERK21vtkClientServerStream+0x2f)[0x7f91171b14e7]
[cluster62:147975] [26] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkPVSessionCore21ExecuteStreamInt ernalERK21vtkClientServerStreamb+0xde)[0x7f91190e52d4]
[cluster62:147975] [27] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkPVSessionCore13ExecuteStreamEjR K21vtkClientServerStreamb+0x1f5)[0x7f91190e50d3]
[cluster62:147975] [28] /share/apps/paraview/5.6.0/lib/libvtkPVServerImplementationCore-pv5.6.so.1(_ZN16vtkPVSessionBase13ExecuteStreamEjR K21vtkClientServerStreamb+0x5a)[0x7f91190e1700]
[cluster62:147975] [29] /share/apps/paraview/5.6.0/lib/libvtkPVServerManagerCore-pv5.6.so.1(_ZN10vtkSMProxy13ExecuteStreamERK21vtkC lientServerStreambj+0xaa)[0x7f91195b6ad6]
[cluster62:147975] *** End of error message ***
/share/apps/OpenFOAM/OpenFOAM-8/bin/paraFoam: line 63: 147975 Segmentation fault LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$ParaView_LIB_DIR/mesa paraview "$@"
Any ideas on what could be the problem?
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