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error make SU2 4.0.1

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Old   September 26, 2015, 04:25
Angry error make SU2 4.0.1
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Heathckliff
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Hi,
when I was trying to compile SU2 4.0.1 from the source, at the make step, I got the following message, and the make process stopped, Does anyone know how to figure out the problem ?

[H@H SU2]# make -j 4
Making all in externals
make[1]: Entering directory `/tmp/SU2/externals'
make[2]: Entering directory `/tmp/SU2'
make[2]: Leaving directory `/tmp/SU2'
Making all in tecio
make[2]: Entering directory `/tmp/SU2/externals/tecio'
Makefile:441: tecsrc/.deps/libtecio_a-TranslatedString.Po: No such file or directory
Makefile:442: tecsrc/.deps/libtecio_a-alloc.Po: No such file or directory
Makefile:443: tecsrc/.deps/libtecio_a-arrlist.Po: No such file or directory
Makefile:444: tecsrc/.deps/libtecio_a-auxdata.Po: No such file or directory
Makefile:445: tecsrc/.deps/libtecio_a-dataio.Po: No such file or directory
Makefile:446: tecsrc/.deps/libtecio_a-dataio4.Po: No such file or directory
Makefile:447: tecsrc/.deps/libtecio_a-dataset.Po: No such file or directory
Makefile:448: tecsrc/.deps/libtecio_a-dataset0.Po: No such file or directory
Makefile:449: tecsrc/.deps/libtecio_a-datautil.Po: No such file or directory
Makefile:450: tecsrc/.deps/libtecio_a-filestream.Po: No such file or directory
Makefile:451: tecsrc/.deps/libtecio_a-geom2.Po: No such file or directory
Makefile:452: tecsrc/.deps/libtecio_a-q_msg.Po: No such file or directory
Makefile:453: tecsrc/.deps/libtecio_a-q_unicode.Po: No such file or directory
Makefile:454: tecsrc/.deps/libtecio_a-set.Po: No such file or directory
Makefile:455: tecsrc/.deps/libtecio_a-strlist.Po: No such file or directory
Makefile:456: tecsrc/.deps/libtecio_a-strutil.Po: No such file or directory
Makefile:457: tecsrc/.deps/libtecio_a-tassert.Po: No such file or directory
Makefile:458: tecsrc/.deps/libtecio_a-tecxxx.Po: No such file or directory
make[2]: *** No rule to make target `tecsrc/.deps/libtecio_a-tecxxx.Po'. Stop.
make[2]: Leaving directory `/tmp/SU2/externals/tecio'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/tmp/SU2/externals'
make: *** [all-recursive] Error 1
[H@H SU2]#
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Old   October 30, 2015, 14:31
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Thomas D. Economon
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Hi,

Hmm.. have you built this version of the code before? Are there old files lying around in those directories?

First, I would try a '$ make clean' to clear out anything that had already been compiled and try again. If you're still having issues, you can disable the tecio library altogether to get around the problem with the configure option '--disable-tecio'. The tecio library is only needed if you would like to output Tecplot binary files.

Hope this helps,
Tom
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Old   November 9, 2015, 05:48
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Heathckliff
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Sorry to reply so late! I finally successfully installed SU2 4.0.1 with the following configurations and steps:

1. Install Intel parallel studio(optional)
1.1 Install expat
1.2 Install python-2.4
1.3 Install pyxml
1.4 Install intel parallel cluster ex 2016

Note: It seems that the student version of parallel studio license doesn't include the mpi sdk,
there just the run-time library; The mpiicc, mpiicpc, mpiifort donot
exist in the mpi folder.

2. Install openmpi
./configure --prefix=/opt/openmpi-x.xx.x CC=icc CXX=icpc FC=ifort F77=ifort
make -j 4
make install

3. Install Mutation++ (Mutation++ requires cmake; if you don't install it, just run: yum install cmake)
unzip mutationpp_0.1_beta.zip
cd mutation++
mkdir build
cd build
cmake ..
make install
add the following to your .bashrc file:
export MPP_DATA_DIRECTORY="path_to_mutation++_directory"/data
export PATH="path_to_mutation++_directory"/install/bin:$PATH
export LD_LIBRARY_PATH="path_to_mutation++_directory"/install/lib:$LD_LIBRARY_PATH

# test installation
checkmix air11

4. Install Szip
cd szip-2.1
./configure --prefix=/opt/szip-2.1
make
make check
make install

5. Install Zlib

6. Install HD5(hd5 requires a libz.a zlib, but cgns requres a shared libz.so, confused!)
export CC=`which mpicc`
./configure --prefix=/opt/hd5 --enable-parallel --with-szlib=/opt/szip-2.1 --with-zlib=/opt/zlib-1.2.8
make -j 4
make check --allow-run-root
make install

7. Install CGNS_3.1.4
cd src
./configure --prefix=/opt/cgns-3.1.4 --enable-legacy --with-hdf5=/opt/hd5 --with-szip=/opt/szip-2.1/lib/libsz.a --with-zlib=/lib/libz.so.1 --with-mpi=`which mpicc` --enable-64bit --enable-lfs
make
make install

8. Install SU2
dos2unix configure
dos2unix config.sub
dos2unix config.guess

source /etc/profile

export CXXFLAGS="-O3"

./configure --prefix=/opt/SU2-4.0.1 --enable-mpi --with-cc=`which mpicc` --with-cxx=`which mpic++` --with-CGNS-lib=/opt/cgns-3.1.4/lib --with-CGNS-include=/opt/cgns-3.1.4/include --with-HDF5-lib=/opt/hd5/lib --with-HDF5-include=/opt/hd5/include --with-SZIP-lib=/opt/szip-2.1/lib --with-SZIP-include=/opt/szip-2.1/include --with-ZLIB-lib=/opt/zlib-1.2.8/lib --with-ZLIB-include=/opt/zlib-1.2.8/include

make -j 4
make install

Note: Although I had installed the Mutation++ package, I did not enabled it with my SU2 installation because... I forgot that I had installed it !
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