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Gmsh mesh to SU2 error : "corrupted size vs. prev_size"

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Old   July 29, 2017, 12:26
Exclamation Gmsh mesh to SU2 error : "corrupted size vs. prev_size"
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Chris McInally
Join Date: Jun 2017
Location: Scotland
Posts: 7
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Hi, I'm currently attempting to just simply run RANS solvet for a RAE2822 airfoil, meshed in gmesh. However I keep getting an error in SU2 that I don't recognize or am able to find a solution to.

Strangely SU2 seems to run fine until it comes to writing the solution file so depending on what iteration that is set to it will run up till that many iterations then exit with one of two errors, which it switches between one after the other each time I try and run it, either:

Or:
Code:
-------------------------- File Output Summary --------------------------
Writing comma-separated values (CSV) surface files.
Loading solution output data locally on each rank.
Sorting output data across all ranks.
[Chrisub:08456] *** Process received signal ***
[Chrisub:08456] Signal: Segmentation fault (11)
[Chrisub:08456] Signal code:  (128)
[Chrisub:08456] Failing at address: (nil)
[Chrisub:08456] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x11390)[0x7f8a6b674390]
[Chrisub:08456] [ 1] SU2_CFD[0x87bbef]
[Chrisub:08456] [ 2] SU2_CFD[0x8a1df5]
[Chrisub:08456] [ 3] SU2_CFD[0x8035f3]
[Chrisub:08456] [ 4] SU2_CFD[0x803d63]
[Chrisub:08456] [ 5] SU2_CFD[0x407c04]
[Chrisub:08456] [ 6] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f8a6b2b9830]
[Chrisub:08456] [ 7] SU2_CFD[0x7d1bf9]
[Chrisub:08456] *** End of error message ***
Segmentation fault (core dumped)
I'm fairly confused and need to fix this ASAP. If anyone has any ideas that would be of great help!

Could it be to do with the splines in my gmsh file?


Code:
//Define Foil Coordinates (128pts)            
Point(1)    =    {    0,        0,        0    };
Point(2)    =    {    0.0006,        0.00323,    0    };
Point(3)    =    {    0.00241,    0.00642,    0    };
Point(4)    =    {    0.00541,    0.00945,    0    };
Point(5)    =    {    0.00961,    0.01269,    0    };
Point(6)    =    {    0.01498,    0.01579,    0    };
Point(7)    =    {    0.02153,    0.01875,    0    };
Point(8)    =    {    0.02923,    0.02163,    0    };
Point(9)    =    {    0.03806,    0.02445,    0    };
Point(10)    =    {    0.04801,    0.02726,    0    };
Point(11)    =    {    0.05904,    0.03004,    0    };
Point(12)    =    {    0.07114,    0.0328,        0    };
Point(13)    =    {    0.08427,    0.03552,    0    };
Point(14)    =    {    0.0984,        0.03817,    0    };
Point(15)    =    {    0.11349,    0.04073,    0    };
Point(16)    =    {    0.12952,    0.04321,    0    };
Point(17)    =    {    0.14645,    0.04558,    0    };
Point(18)    =    {    0.16422,    0.04778,    0    };
Point(19)    =    {    0.1828,        0.04987,    0    };
Point(20)    =    {    0.20215,    0.05187,    0    };
Point(21)    =    {    0.22221,    0.05377,    0    };
Point(22)    =    {    0.24295,    0.05556,    0    };
Point(23)    =    {    0.2643,        0.05713,    0    };
Point(24)    =    {    0.28622,    0.05848,    0    };
Point(25)    =    {    0.30866,    0.05967,    0    };
Point(26)    =    {    0.33156,    0.0607,        0    };
Point(27)    =    {    0.35486,    0.06155,    0    };
Point(28)    =    {    0.37851,    0.0622,        0    };
Point(29)    =    {    0.40245,    0.06263,    0    };
Point(30)    =    {    0.42663,    0.06285,    0    };
Point(31)    =    {    0.45099,    0.06286,    0    };
Point(32)    =    {    0.47547,    0.06261,    0    };
Point(33)    =    {    0.5,        0.06212,    0    };
Point(34)    =    {    0.52453,    0.06135,    0    };
Point(35)    =    {    0.54901,    0.0603,        0    };
Point(36)    =    {    0.57336,    0.05895,    0    };
Point(37)    =    {    0.59754,    0.05733,    0    };
Point(38)    =    {    0.62149,    0.05547,    0    };
Point(39)    =    {    0.64514,    0.05339,    0    };
Point(40)    =    {    0.66845,    0.05112,    0    };
Point(41)    =    {    0.69134,    0.04857,    0    };
Point(42)    =    {    0.71378,    0.04612,    0    };
Point(43)    =    {    0.7357,        0.04338,    0    };
Point(44)    =    {    0.75705,    0.04075,    0    };
Point(45)    =    {    0.77778,    0.03795,    0    };
Point(46)    =    {    0.79785,    0.03514,    0    };
Point(47)    =    {    0.8172,        0.03231,    0    };
Point(48)    =    {    0.83578,    0.02948,    0    };
Point(49)    =    {    0.85355,    0.0267,        0    };
Point(50)    =    {    0.87048,    0.02397,    0    };
Point(51)    =    {    0.88651,    0.02131,    0    };
Point(52)    =    {    0.9016,        0.01874,    0    };
Point(53)    =    {    0.91574,    0.01627,    0    };
Point(54)    =    {    0.92886,    0.01393,    0    };
Point(55)    =    {    0.94096,    0.0117,        0    };
Point(56)    =    {    0.952,        0.00964,    0    };
Point(57)    =    {    0.96194,    0.00775,    0    };
Point(58)    =    {    0.97077,    0.00606,    0    };
Point(59)    =    {    0.97847,    0.00455,    0    };
Point(60)    =    {    0.98502,    0.00326,    0    };
Point(61)    =    {    0.99039,    0.00218,    0    };
Point(62)    =    {    0.99459,    0.00132,    0    };
Point(63)    =    {    0.99759,    0.00069,    0    };
Point(64)    =    {    0.9994,        0.0003,        0    };
Point(65)    =    {    1,        0,        0    };
Point(66)    =    {    0.9994,        -0.00001,    0    };
Point(67)    =    {    0.99759,    0.00009,    0    };
Point(68)    =    {    0.99459,    0.00026,    0    };
Point(69)    =    {    0.99039,    0.00048,    0    };
Point(70)    =    {    0.98502,    0.00071,    0    };
Point(71)    =    {    0.97847,    0.00094,    0    };
Point(72)    =    {    0.97077,    0.00113,    0    };
Point(73)    =    {    0.96194,    0.00125,    0    };
Point(74)    =    {    0.952,        0.00125,    0    };
Point(75)    =    {    0.94096,    0.00113,    0    };
Point(76)    =    {    0.92886,    0.00081,    0    };
Point(77)    =    {    0.91574,    0.00027,    0    };
Point(78)    =    {    0.9016,        -0.00049,    0    };
Point(79)    =    {    0.88651,    -0.00149,    0    };
Point(80)    =    {    0.87048,    -0.00273,    0    };
Point(81)    =    {    0.85355,    -0.00422,    0    };
Point(82)    =    {    0.83578,    -0.00594,    0    };
Point(83)    =    {    0.8172,        -0.00792,    0    };
Point(84)    =    {    0.79785,    -0.01013,    0    };
Point(85)    =    {    0.77778,    -0.01256,    0    };
Point(86)    =    {    0.75705,    -0.01524,    0    };
Point(87)    =    {    0.7357,        -0.01812,    0    };
Point(88)    =    {    0.71378,    -0.02118,    0    };
Point(89)    =    {    0.69134,    -0.02438,    0    };
Point(90)    =    {    0.66845,    -0.0277,    0    };
Point(91)    =    {    0.64514,    -0.0311,    0    };
Point(92)    =    {    0.62149,    -0.03463,    0    };
Point(93)    =    {    0.59754,    -0.03791,    0    };
Point(94)    =    {    0.57336,    -0.04127,    0    };
Point(95)    =    {    0.54901,    -0.04452,    0    };
Point(96)    =    {    0.52453,    -0.04761,    0    };
Point(97)    =    {    0.5,        -0.05044,    0    };
Point(98)    =    {    0.47547,    -0.05297,    0    };
Point(99)    =    {    0.45099,    -0.05515,    0    };
Point(100)    =    {    0.42663,    -0.05689,    0    };
Point(101)    =    {    0.40245,    -0.05817,    0    };
Point(102)    =    {    0.37851,    -0.05893,    0    };
Point(103)    =    {    0.35486,    -0.05919,    0    };
Point(104)    =    {    0.33156,    -0.059,        0    };
Point(105)    =    {    0.30866,    -0.05843,    0    };
Point(106)    =    {    0.28622,    -0.05753,    0    };
Point(107)    =    {    0.2643,        -0.05638,    0    };
Point(108)    =    {    0.24295,    -0.05498,    0    };
Point(109)    =    {    0.22221,    -0.0534,    0    };
Point(110)    =    {    0.20215,    -0.05167,    0    };
Point(111)    =    {    0.1828,        -0.04977,    0    };
Point(112)    =    {    0.16422,    -0.04775,    0    };
Point(113)    =    {    0.14645,    -0.04561,    0    };
Point(114)    =    {    0.12952,    -0.04333,    0    };
Point(115)    =    {    0.11349,    -0.04094,    0    };
Point(116)    =    {    0.0984,        -0.03844,    0    };
Point(117)    =    {    0.08427,    -0.03584,    0    };
Point(118)    =    {    0.07114,    -0.03315,    0    };
Point(119)    =    {    0.05904,    -0.03042,    0    };
Point(120)    =    {    0.04801,    -0.02761,    0    };
Point(121)    =    {    0.03806,    -0.02472,    0    };
Point(122)    =    {    0.02923,    -0.0218,    0    };
Point(123)    =    {    0.02153,    -0.0188,    0    };
Point(124)    =    {    0.01498,    -0.0158,    0    };
Point(125)    =    {    0.00961,    -0.01273,    0    };
Point(126)    =    {    0.00541,    -0.00957,    0    };
Point(127)    =    {    0.00241,    -0.00658,    0    };
Point(128)    =    {    0.0006,        -0.00317,    0    };

//Airfoil
Spline(1) = {1:128, 1};

//Circle Points
Point(130) = {0.5, 0.00183, 0};
Point(131) = {100.5, 0.00183, 0};
Point(132) = {0.5, -99.99817, 0};
Point(133) = {-99.5, 0.00183, 0};
Point(134) = {0.5, 100.00183, 0};

//farfield circle
Circle(1001) = {131, 130, 132};
Circle(1002) = {132, 130, 133};
Circle(1003) = {133, 130, 134};
Circle(1004) = {131, 130, 134};

//Surface
Line Loop(1) = {1003, -1004, 1001, 1002};     //Circle
Line Loop(2) = {1, 2};                 //airfoil

Plane Surface(1) = {1,2};

//Boundaries
Physical Line("farfield") = {1002, 1001, 1004, 1003};
Physical Line("airfoil") = {1};

//Mesh lengths
Mesh.CharacteristicLengthMax = 0.001;
Mesh.CharacteristicLengthMax = 40;
Characteristic Length {1:128} = 0.01;
I'm not concerned about the correct mesh size or boundary layers etc at the moment, just getting it to run as a coarse mesh on SU2 is the priority.

Ive attached the .su2, .cfg, and second error (as it was too many characters) file. Any help or suggestions would be greatly appreciated.

Chris
Attached Files
File Type: txt Error 1 - RAE2822.txt (23.9 KB, 7 views)
File Type: txt turb_RA2822 cfg.txt (8.0 KB, 5 views)
File Type: txt RAE2822_G0_mesh (su2).txt (101.2 KB, 6 views)
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Tags
gmsh, rae2822, rans, su2 error


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