[Ya_Squall2010]

Hi all,

Over the time I receive fatal error while using the runtime 'surfaceElevation' functionObject in parallel runs. A typical error message is as follows:

new cannot satisfy memory request.
This does not necessarily mean you have run out of virtual memory.
It could be due to a stack violation caused by e.g. bad use of pointers or an out of date shared library
Fatal error in MPI_Probe: Other MPI error, error stack:
MPI_Probe(113).................: MPI_Probe(src=32, tag=1, MPI_COMM_WORLD, status=0x7fffa9632b58) failed
MPIDI_CH3I_Progress(401).......:
MPID_nem_tcp_poll(2332)........:
MPID_nem_tcp_connpoll(2582)....:
state_commrdy_handler(2208)....:
MPID_nem_tcp_recv_handler(2081): socket closed

I wonder is there anyone here ever came across a similar problem. I have attached my blockMeshDict, decomposeParDict and controlDict for you to inspect or try to reproduce the error. Thanks a lot!
blockMeshDict.txt
controlDict.txt
decomposeParDict.txt

[MehdiCFD]

hello everyone,

Im using waveFoam with waveGaugesNProbes in parallel (waveFlume for ex) in OpenFOAM extend 4.0 but it buggs and print me this message:

PIMPLE: Operating solver in PISO mode


Reading g

Reading waveProperties

Reading waveProperties
Reading field pd

Reading field alpha1

Reading field U

Reading/calculating face flux field phi

Reading transportProperties

Selecting incompressible transport model Newtonian
Selecting incompressible transport model Newtonian
Calculating field g.h

Selecting turbulence model type laminar
time step continuity errors : sum local = 0, global = 0, cumulative = 0
PCG:  Solving for pcorr, Initial residual = 0, Final residual = 0, No Iterations 0
PCG:  Solving for pcorr, Initial residual = 0, Final residual = 0, No Iterations 0
time step continuity errors : sum local = 0, global = 0, cumulative = 0
Courant Number mean: 0 max: 0 velocity magnitude: 0

Starting time loop

Courant Number mean: 0 max: 0 velocity magnitude: 0
deltaT = 0.0011976
--> FOAM Warning : 
    From function dlLibraryTable::open(const dictionary& dict, const word& libsEntry, const TablePtr tablePtr)
    in file lnInclude/dlLibraryTableTemplates.C at line 67
    library "libwaves2Foam.so" did not introduce any new entries

Time = 0.0011976

PIMPLE: iteration 1
MULES: Solving for alpha1
Liquid phase volume fraction = 0.666667  Min(alpha1) = 0  Max(alpha1) = 1
Relaxing time: 0.01 s
DILUPBiCG:  Solving for Ux, Initial residual = 2.68409e-07, Final residual = 1.05821e-16, No Iterations 1
DILUPBiCG:  Solving for Uy, Initial residual = 1.14968e-07, Final residual = 3.61842e-16, No Iterations 1
DICPCG:  Solving for pd, Initial residual = 1, Final residual = 0.000906114, No Iterations 36
DICPCG:  Solving for pd, Initial residual = 1.54019e-07, Final residual = 5.3285e-08, No Iterations 1
DICPCG:  Solving for pd, Initial residual = 2.86385e-07, Final residual = 7.31041e-08, No Iterations 4
PCG:  Solving for pd, Initial residual = 7.31022e-08, Final residual = 7.31022e-08, No Iterations 0
PCG:  Solving for pd, Initial residual = 7.31161e-08, Final residual = 7.31161e-08, No Iterations 0
PCG:  Solving for pd, Initial residual = 7.31161e-08, Final residual = 7.31161e-08, No Iterations 0
time step continuity errors : sum local = 6.55783e-12, global = -1.11635e-12, cumulative = -1.11635e-12
ExecutionTime = 0.32 s  ClockTime = 1 s

Courant Number mean: 4.43401e-07 max: 2.45643e-05 velocity magnitude: 0.000249729
deltaT = 0.00143023
[islin130:18297] *** Process received signal ***
[islin130:18297] Signal: Aborted (6)
[islin130:18297] Signal code:  (-6)
[islin130:18297] [ 0] /lib64/libc.so.6[0x3b2f432660]
[islin130:18297] [ 1] /lib64/libc.so.6(gsignal+0x35)[0x3b2f4325e5]
[islin130:18297] [ 2] /lib64/libc.so.6(abort+0x175)[0x3b2f433dc5]
[islin130:18297] [ 3] /lib64/libc.so.6[0x3b2f4704f7]
[islin130:18297] [ 4] /lib64/libc.so.6[0x3b2f475f3e]
[islin130:18297] [ 5] /lib64/libc.so.6[0x3b2f47a4fa]
[islin130:18297] [ 6] /lib64/libc.so.6(__libc_malloc+0x5c)[0x3b2f47abfc]
[islin130:18297] [ 7] /usr/lib64/libstdc++.so.6(_Znwm+0x1d)[0x3b35cbd0bd]
[islin130:18297] [ 8] /usr/lib64/libstdc++.so.6(_Znam+0x9)[0x3b35cbd1d9]
[islin130:18297] [ 9] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libfoam.so(_ZN4Foam4ListIcE7setSizeEi+0x31)[0x7fec0906b571]
[islin130:18297] [10] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libfoam.so(_ZN4Foam8IPstreamC1ENS_7Pstream10commsTypesEiiiiNS_8IOstream12streamFormatENS3_13versionNumberE+0x12d)[0x7fec0906bccd]
[islin130:18297] [11] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libwaves2FoamSampling.so(_ZN4Foam7Pstream10gatherListINS_5FieldIdEEEEvRKNS_4ListINS0_11commsStructEEERNS4_IT_EEii+0x1b5)[0x7fec09a34ab5]
[islin130:18297] [12] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libwaves2FoamSampling.so(_ZN4Foam23sampledSurfaceElevation20combineSampledValuesIdEEvRKNS_7PtrListINS0_15volFieldSamplerIT_EEEERKNS_4ListINS9_IiEEEERS6_+0x42f)[0x7fec09a352ef]
[islin130:18297] [13] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libwaves2FoamSampling.so(_ZN4Foam23sampledSurfaceElevation18sampleAndIntegrateERNS0_10fieldGroupIdEERNS_5FieldIdEE+0x24e)[0x7fec09a1fe9e]
[islin130:18297] [14] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libwaves2FoamSampling.so(_ZN4Foam23sampledSurfaceElevation23sampleIntegrateAndWriteERNS0_10fieldGroupIdEE+0x6e)[0x7fec09a207fe]
[islin130:18297] [15] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libwaves2FoamSampling.so(_ZN4Foam26OutputFilterFunctionObjectINS_23sampledSurfaceElevationEE7executeEv+0xb2)[0x7fec09a3bae2]
[islin130:18297] [16] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libfoam.so(_ZN4Foam18functionObjectList7executeEv+0x16e)[0x7fec090918ee]
[islin130:18297] [17] /soft/irsrvsoft1/expl/centos_6/OpenFOAM/4.0/foam-extend-4.0/lib/linux64GccDPOpt/libfoam.so(_ZN4Foam4TimeppEv+0x71)[0x7fec09095b01]
[islin130:18297] [18] waveFoam[0x42d728]
[islin130:18297] [19] /lib64/libc.so.6(__libc_start_main+0xfd)[0x3b2f41ed1d]
[islin130:18297] [20] waveFoam[0x42a989]
[islin130:18297] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 18297 on node islin130 exited on signal 6 (Aborted).
--------------------------------------------------------------------------

but within 1 processor, it's all right and if i disable sampling surfaceElevation in parallel, it run perfectly, so i don't know where is the problem, i thought in some option who has relation with parallel running in libwaves2foam.so or ....
NB: in all calcul with waveFoam the message bellow appear and i don't find this file :

 --> FOAM Warning : 
    From function dlLibraryTable::open(const dictionary& dict, const word& libsEntry, const TablePtr tablePtr)
    in file lnInclude/dlLibraryTableTemplates.C at line 67
    library "libwaves2Foam.so" did not introduce any new entries

think you for helping me.

Best regards,
Mehdi