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December 10, 2013, 11:53 |
OpenFOAM 1.6 ext
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#1 |
Member
Felipe Alves Portela
Join Date: Dec 2012
Location: FR
Posts: 70
Rep Power: 13 |
Hello,
I've been trying to install OpenFOAM 1.6 ext for a while now without success. I'm following the instructions given here: http://openfoamwiki.net/index.php/In...1.6-ext/Ubuntu And I've looked in the forum at similar issues, but without success... It seems like during stage 3 something goes wrong with ParMGridGen and ParMetis as seen below. Has anyone come across similar issues? Any suggestions? Cheers, Felipe Code:
Package name : ParMGridGen-1.0 Package URL : http://www.mgnet.org/mgnet/Codes/parmgridgen/ParMGridGen-1.0.tar.gz RPM spec file name: ParMGridGen-1.0.spec Additional flags : Updating the ThirdParty environment variables before building package ParMGridGen-1.0 Making package ParMGridGen-1.0 using RPM. Building package ParMGridGen-1.0 using SPEC file : ParMGridGen-1.0.spec. Optional args: Executing(%prep): /bin/sh -e /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.diT7c4 + umask 022 + cd /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD + cd /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD + rm -rf ParMGridGen-1.0 + /b -dc /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/SOURCES/ParMGridGen-1.0.tar.gz/bin/tar -xf - + STATUS=0 + [ 0 -ne 0 ] + cd ParMGridGen-1.0 + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo Patch #1 (ParMGridGen-1.0.patch): Patch #1 (ParMGridGen-1.0.patch): + + in/cat /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/SOURCES/ParMGridGen-1.0.patch /usr/bin/patch -p1 --fuzz=0 patching file Makefile.in patching file MGridGen/IMlib/Makefile patching file MGridGen/Lib/Makefile patching file MGridGen/Programs/Makefile + exit 0 Executing(%build): /bin/sh -e /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.POIHpY + umask 022 + cd /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD + cd ParMGridGen-1.0 + [ -n gcc ] + export CC=gcc + [ -n g++ ] + export CXX=g++ + [ -n -m64 -fPIC ] + export CFLAGS=-m64 -fPIC + [ -n -m64 -fPIC ] + export CXXFLAGS=-m64 -fPIC + [ -n -m64 ] + export LDFLAGS=-m64 + [ -z 6 ] + make -j 6 CC=gcc (cd MGridGen ; make) make[1]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen' make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. (cd IMlib ; gmake ) gmake[2]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen/IMlib' gcc -fPIC -O3 -I./ -c blas.c gcc -fPIC -O3 -I./ -c dfkeysort.c gcc -fPIC -O3 -I./ -c dkeysort.c gcc -fPIC -O3 -I./ -c file.c gcc -fPIC -O3 -I./ -c ifkeysort.c gcc -fPIC -O3 -I./ -c ifloatsort.c gcc -fPIC -O3 -I./ -c iintsort.c gcc -fPIC -O3 -I./ -c ikeysort.c gcc -fPIC -O3 -I./ -c memory.c gcc -fPIC -O3 -I./ -c sort.c gcc -fPIC -O3 -I./ -c util.c gcc -shared -o libIMlib.so blas.o dfkeysort.o dkeysort.o file.o ifkeysort.o ifloatsort.o iintsort.o ikeysort.o memory.o sort.o util.o true libIMlib.so gmake[2]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen/IMlib' (cd Lib ; gmake ) gmake[2]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen/Lib' gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c aratio.c gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c coarsen.c gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c kwayfm.c gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c match.c gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c merge.c merge.c: In function 'Merge0': merge.c:1040:10: warning: format '%d' expects argument of type 'int', but argument 2 has type 'realtype *' [-Wformat=] IFSET(ctrl->dbglvl, DBG_MERGE, ^ gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c mgridgen.c gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c refine.c gcc -fPIC -O3 -I./ -I../../MGridGen/IMlib -c setup.c gcc -shared -o libMGridGen.so aratio.o coarsen.o kwayfm.o match.o merge.o mgridgen.o refine.o setup.o ../IMlib/blas.o ../IMlib/dfkeysort.o ../IMlib/dkeysort.o ../IMlib/file.o ../IMlib/ifkeysort.o ../IMlib/ifloatsort.o ../IMlib/iintsort.o ../IMlib/ikeysort.o ../IMlib/memory.o ../IMlib/sort.o ../IMlib/util.o true libMGridGen.so gmake[2]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen/Lib' (cd Programs ; gmake ) gmake[2]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen/Programs' gcc -fPIC -O3 -I../../MGridGen/IMlib -I../Lib -c mgridgen.c gcc -fPIC -O3 -I../../MGridGen/IMlib -I../Lib -c io.c io.c: In function 'ReadGraph': io.c:31:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c:52:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c: In function 'TransformGraph': io.c:107:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c:119:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ gcc -O3 -L../.. -L../Lib -L/usr/lib32/ -o ../../mgridgen mgridgen.o io.o -lMGridGen -lm ../Lib/libMGridGen.so: undefined reference to `log' ../Lib/libMGridGen.so: undefined reference to `pow' ../Lib/libMGridGen.so: undefined reference to `sqrt' collect2: error: ld returned 1 exit status gmake[2]: *** [../../mgridgen] Error 1 gmake[2]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen/Programs' make[1]: *** [default] Error 2 make[1]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMGridGen-1.0/MGridGen' make: *** [default] Error 2 error: Bad exit status from /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.POIHpY (%build) RPM build errors: Bad exit status from /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.POIHpY (%build) Installing package: ParMGridGen-1.0 Uninstalling ParMGridGen-1.0 using RPM: ParMGridGen-1.0-linux64Gcc48DPOpt.x86_64 Installing ParMGridGen-1.0 using RPM file: /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/RPMS/x86_64/ParMGridGen-1.0-linux64Gcc48DPOpt.x86_64.rpm error: open of /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/RPMS/x86_64/ParMGridGen-1.0-linux64Gcc48DPOpt.x86_64.rpm failed: No such file or directory Done installing package Package name : ParMetis-3.1.1 Package URL : http://glaros.dtc.umn.edu/gkhome/fetch/sw/parmetis/OLD/ParMetis-3.1.1.tar.gz RPM spec file name: ParMetis-3.1.1.spec Additional flags : Updating the ThirdParty environment variables before building package ParMetis-3.1.1 Making package ParMetis-3.1.1 using RPM. Building package ParMetis-3.1.1 using SPEC file : ParMetis-3.1.1.spec. Optional args: Executing(%prep): /bin/sh -e /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.j9koJB + umask 022 + cd /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD + cd /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD + rm -rf ParMetis-3.1.1 + /bin/gzip/bin/tar -xf - + STATUS=0 + [ 0 -ne 0 ] + cd ParMetis-3.1.1 + /bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo Patch #1 (ParMetis-3.1.1.patch): Patch #1 (ParMetis-3.1.1.patch): + /bin/cat /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/SOURCES/ParMetis-3.1.1.patch /usr/bin/patch -p1 --fuzz=0 patching file METISLib/Makefile patching file Makefile.in patching file ParMETISLib/Makefile patching file Programs/Makefile + exit 0 Executing(%build): /bin/sh -e /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.eTCfRH + umask 022 + cd /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD + cd ParMetis-3.1.1 + [ -n gcc ] + export CC=gcc + [ -n g++ ] + export CXX=g++ + [ -n -m64 -fPIC ] + export CFLAGS=-m64 -fPIC + [ -n -m64 -fPIC ] + export CXXFLAGS=-m64 -fPIC + [ -n -m64 ] + export LDFLAGS=-m64 + [ -z 6 ] + make -j 6 (cd METISLib ; make ) make[1]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMetis-3.1.1/METISLib' make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. mpicc -DNDEBUG -O3 -fPIC -I. -c coarsen.c mpicc -DNDEBUG -O3 -fPIC -I. -c fm.c mpicc -DNDEBUG -O3 -fPIC -I. -c initpart.c mpicc -DNDEBUG -O3 -fPIC -I. -c match.c mpicc -DNDEBUG -O3 -fPIC -I. -c ccgraph.c mpicc -DNDEBUG -O3 -fPIC -I. -c pmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c pqueue.c mpicc -DNDEBUG -O3 -fPIC -I. -c refine.c mpicc -DNDEBUG -O3 -fPIC -I. -c util.c util.c: In function '__errexit': util.c:31:3: warning: format not a string literal and no format arguments [-Wformat-security] fprintf(stdout, out2); ^ mpicc -DNDEBUG -O3 -fPIC -I. -c timing.c mpicc -DNDEBUG -O3 -fPIC -I. -c debug.c mpicc -DNDEBUG -O3 -fPIC -I. -c bucketsort.c mpicc -DNDEBUG -O3 -fPIC -I. -c graph.c mpicc -DNDEBUG -O3 -fPIC -I. -c stat.c mpicc -DNDEBUG -O3 -fPIC -I. -c kmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwayrefine.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwayfm.c mpicc -DNDEBUG -O3 -fPIC -I. -c balance.c mpicc -DNDEBUG -O3 -fPIC -I. -c ometis.c mpicc -DNDEBUG -O3 -fPIC -I. -c srefine.c mpicc -DNDEBUG -O3 -fPIC -I. -c sfm.c mpicc -DNDEBUG -O3 -fPIC -I. -c separator.c mpicc -DNDEBUG -O3 -fPIC -I. -c mincover.c mpicc -DNDEBUG -O3 -fPIC -I. -c mmd.c mpicc -DNDEBUG -O3 -fPIC -I. -c mesh.c mpicc -DNDEBUG -O3 -fPIC -I. -c meshpart.c mpicc -DNDEBUG -O3 -fPIC -I. -c frename.c mpicc -DNDEBUG -O3 -fPIC -I. -c fortran.c mpicc -DNDEBUG -O3 -fPIC -I. -c myqsort.c mpicc -DNDEBUG -O3 -fPIC -I. -c compress.c mpicc -DNDEBUG -O3 -fPIC -I. -c parmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c estmem.c mpicc -DNDEBUG -O3 -fPIC -I. -c mpmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c mcoarsen.c mpicc -DNDEBUG -O3 -fPIC -I. -c mmatch.c mpicc -DNDEBUG -O3 -fPIC -I. -c minitpart.c mpicc -DNDEBUG -O3 -fPIC -I. -c mbalance.c mpicc -DNDEBUG -O3 -fPIC -I. -c mutil.c mpicc -DNDEBUG -O3 -fPIC -I. -c mkmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c mkwayrefine.c mpicc -DNDEBUG -O3 -fPIC -I. -c mkwayfmh.c mpicc -DNDEBUG -O3 -fPIC -I. -c mrefine2.c mpicc -DNDEBUG -O3 -fPIC -I. -c minitpart2.c mpicc -DNDEBUG -O3 -fPIC -I. -c mbalance2.c mpicc -DNDEBUG -O3 -fPIC -I. -c mfm2.c mpicc -DNDEBUG -O3 -fPIC -I. -c kvmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwayvolrefine.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwayvolfm.c mpicc -DNDEBUG -O3 -fPIC -I. -c subdomains.c mpicc -DNDEBUG -O3 -fPIC -I. -c mfm.c mpicc -DNDEBUG -O3 -fPIC -I. -c memory.c mpicc -DNDEBUG -O3 -fPIC -I. -c mrefine.c mpicc -DNDEBUG -O3 -fPIC -I. -c checkgraph.c gcc -shared -o libmetis-parmetis.so coarsen.o fm.o initpart.o match.o ccgraph.o pmetis.o pqueue.o refine.o util.o timing.o debug.o bucketsort.o graph.o stat.o kmetis.o kwayrefine.o kwayfm.o balance.o ometis.o srefine.o sfm.o separator.o mincover.o mmd.o mesh.o meshpart.o frename.o fortran.o myqsort.o compress.o parmetis.o estmem.o mpmetis.o mcoarsen.o mmatch.o minitpart.o mbalance.o mutil.o mkmetis.o mkwayrefine.o mkwayfmh.o mrefine2.o minitpart2.o mbalance2.o mfm2.o kvmetis.o kwayvolrefine.o kwayvolfm.o subdomains.o mfm.o memory.o mrefine.o checkgraph.o true libmetis-parmetis.so make[1]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMetis-3.1.1/METISLib' (cd ParMETISLib ; make ) make[1]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMetis-3.1.1/ParMETISLib' make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. mpicc -DNDEBUG -O3 -fPIC -I. -c comm.c mpicc -DNDEBUG -O3 -fPIC -I. -c util.c util.c: In function 'errexit__': util.c:31:3: warning: format not a string literal and no format arguments [-Wformat-security] fprintf(stdout, out2); ^ util.c: In function 'myprintf__': util.c:52:3: warning: format not a string literal and no format arguments [-Wformat-security] fprintf(stdout, out2); ^ mpicc -DNDEBUG -O3 -fPIC -I. -c debug.c mpicc -DNDEBUG -O3 -fPIC -I. -c setup.c mpicc -DNDEBUG -O3 -fPIC -I. -c grsetup.c mpicc -DNDEBUG -O3 -fPIC -I. -c timer.c mpicc -DNDEBUG -O3 -fPIC -I. -c node_refine.c mpicc -DNDEBUG -O3 -fPIC -I. -c initmsection.c mpicc -DNDEBUG -O3 -fPIC -I. -c order.c mpicc -DNDEBUG -O3 -fPIC -I. -c xyzpart.c mpicc -DNDEBUG -O3 -fPIC -I. -c pspases.c mpicc -DNDEBUG -O3 -fPIC -I. -c frename.c mpicc -DNDEBUG -O3 -fPIC -I. -c iintsort.c mpicc -DNDEBUG -O3 -fPIC -I. -c iidxsort.c mpicc -DNDEBUG -O3 -fPIC -I. -c ikeysort.c mpicc -DNDEBUG -O3 -fPIC -I. -c ikeyvalsort.c mpicc -DNDEBUG -O3 -fPIC -I. -c kmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c gkmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c ometis.c mpicc -DNDEBUG -O3 -fPIC -I. -c initpart.c mpicc -DNDEBUG -O3 -fPIC -I. -c match.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwayfm.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwayrefine.c mpicc -DNDEBUG -O3 -fPIC -I. -c kwaybalance.c mpicc -DNDEBUG -O3 -fPIC -I. -c remap.c mpicc -DNDEBUG -O3 -fPIC -I. -c stat.c mpicc -DNDEBUG -O3 -fPIC -I. -c fpqueue.c mpicc -DNDEBUG -O3 -fPIC -I. -c ametis.c mpicc -DNDEBUG -O3 -fPIC -I. -c rmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c lmatch.c mpicc -DNDEBUG -O3 -fPIC -I. -c initbalance.c mpicc -DNDEBUG -O3 -fPIC -I. -c mdiffusion.c mpicc -DNDEBUG -O3 -fPIC -I. -c diffutil.c mpicc -DNDEBUG -O3 -fPIC -I. -c wave.c mpicc -DNDEBUG -O3 -fPIC -I. -c csrmatch.c mpicc -DNDEBUG -O3 -fPIC -I. -c redomylink.c mpicc -DNDEBUG -O3 -fPIC -I. -c balancemylink.c mpicc -DNDEBUG -O3 -fPIC -I. -c selectq.c mpicc -DNDEBUG -O3 -fPIC -I. -c akwayfm.c mpicc -DNDEBUG -O3 -fPIC -I. -c serial.c mpicc -DNDEBUG -O3 -fPIC -I. -c move.c mpicc -DNDEBUG -O3 -fPIC -I. -c mmetis.c mpicc -DNDEBUG -O3 -fPIC -I. -c mesh.c mpicc -DNDEBUG -O3 -fPIC -I. -c memory.c mpicc -DNDEBUG -O3 -fPIC -I. -c weird.c mpicc -DNDEBUG -O3 -fPIC -I. -c backcompat.c gcc -shared -o libparmetis.so comm.o util.o debug.o setup.o grsetup.o timer.o node_refine.o initmsection.o order.o xyzpart.o pspases.o frename.o iintsort.o iidxsort.o ikeysort.o ikeyvalsort.o kmetis.o gkmetis.o ometis.o initpart.o match.o kwayfm.o kwayrefine.o kwaybalance.o remap.o stat.o fpqueue.o ametis.o rmetis.o lmatch.o initbalance.o mdiffusion.o diffutil.o wave.o csrmatch.o redomylink.o balancemylink.o selectq.o akwayfm.o serial.o move.o mmetis.o mesh.o memory.o weird.o backcompat.o true libparmetis.so make[1]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMetis-3.1.1/ParMETISLib' (cd Programs ; make ) make[1]: Entering directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMetis-3.1.1/Programs' make[1]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. mpicc -DNDEBUG -O3 -fPIC -I./ -I../ParMETISLib -c ptest.c mpicc -DNDEBUG -O3 -fPIC -I./ -I../ParMETISLib -c io.c io.c: In function 'ParallelReadGraph': io.c:58:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c:132:16: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c:208:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c:220:16: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c: In function 'ReadTestCoordinates': io.c:452:17: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] fscanf(fpin, "%e ", txyz+k*ndims+j); ^ io.c: In function 'ReadMetisGraph': io.c:489:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 8192, fpin); ^ io.c:498:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 8192, fpin); ^ io.c: In function 'Mc_SerialReadMetisGraph': io.c:697:8: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 8192, fpin); ^ io.c:726:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, 8192, fpin); ^ io.c: In function 'ParallelReadMesh': io.c:897:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ io.c:943:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, fpin); ^ mpicc -DNDEBUG -O3 -fPIC -I./ -I../ParMETISLib -c adaptgraph.c mpicc -o ../Graphs/ptest ptest.o io.o adaptgraph.o -L../METISLib -L../ParMETISLib -L/opt/local/lib -L/usr/lib -lparmetis -lmetis-parmetis -lm chmod 744 ../Graphs/ptest mpicc -DNDEBUG -O3 -fPIC -I./ -I../ParMETISLib -c mtest.c mpicc -o ../Graphs/mtest mtest.o io.o -L../METISLib -L../ParMETISLib -L/opt/local/lib -L/usr/lib -lparmetis -lmetis-parmetis -lm ../ParMETISLib/libparmetis.so: undefined reference to `sqrtf' ../METISLib/libmetis-parmetis.so: undefined reference to `log' ../METISLib/libmetis-parmetis.so: undefined reference to `pow' collect2: error: ld returned 1 exit status make[1]: *** [../Graphs/mtest] Error 1 make[1]: Leaving directory `/home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/BUILD/ParMetis-3.1.1/Programs' make: *** [default] Error 2 error: Bad exit status from /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.eTCfRH (%build) RPM build errors: Bad exit status from /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/tmp/rpm-tmp.eTCfRH (%build) Installing package: ParMetis-3.1.1 Uninstalling ParMetis-3.1.1 using RPM: ParMetis-3.1.1-linux64Gcc48DPOpt.x86_64 Installing ParMetis-3.1.1 using RPM file: /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/RPMS/x86_64/ParMetis-3.1.1-linux64Gcc48DPOpt.x86_64.rpm error: open of /home/felipe/OpenFOAM/OpenFOAM-1.6-ext/ThirdParty/rpmBuild/RPMS/x86_64/ParMetis-3.1.1-linux64Gcc48DPOpt.x86_64.rpm failed: No such file or directory Done installing package ======================================== Done ThirdParty AllMake: Stage3 ======================================== |
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December 10, 2013, 18:18 |
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#2 |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Greetings Felipe,
Code:
../Lib/libMGridGen.so: undefined reference to `log' ../Lib/libMGridGen.so: undefined reference to `pow' ../Lib/libMGridGen.so: undefined reference to `sqrt' Which specific Ubuntu version and architecture are you using? Because if it is Ubuntu 13.10, I haven't written that section yet on that wiki page Best regards, Bruno
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December 10, 2013, 19:36 |
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#3 | |
Member
Felipe Alves Portela
Join Date: Dec 2012
Location: FR
Posts: 70
Rep Power: 13 |
Hi Bruno,
I thought you'd come to the rescue Indeed I'm trying to get this working on Ubuntu 13.10, which I am starting to regret... I had stumbled upon this but isn't this related to OF 2.2? For 1.6-ext, I'm note really sure where to place the suggested lines... When following the wikki I used gcc48 instead of gcc47 (fyi) Cheers, Felipe Quote:
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December 11, 2013, 16:40 |
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#4 | |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,981
Blog Entries: 45
Rep Power: 128 |
Hi Felipe,
I don't have time to look into this before Sunday, but the idea is to look into the patches used by 1.6-ext: Quote:
Best regards, Bruno
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December 11, 2013, 16:57 |
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#5 |
Member
Felipe Alves Portela
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Hi Bruno,
No worries, I'm not in a rush I had tried adding the options in the patch for building Scotch, though from your last post it seems to me I should add the options to ParMGridGen and ParMetis, am I right? Cheers, Felipe |
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December 15, 2013, 15:48 |
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#6 |
Retired Super Moderator
Bruno Santos
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Hi Felipe,
Sorry, I won't be able to look better into this before the 25th of December. Nonetheless, the team working on 1.6-ext has got the branch "nextRelease", which is still in the works. They already have this particular issue fixed, which you can see an example here: https://github.com/Unofficial-Extend...15f294f#diff-1 - it's for the file "ParMGridGen-1.0.patch". The other files need to be patched in a similar way, but the ones on "nextRelease" are mostly targeting the new versions of the libraries, with the exception of "ParMGridGen-1.0.patch" (I think). Best regards, Bruno
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December 19, 2013, 12:34 |
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#7 |
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Eric Bryant
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As indicated in ReleaseNotes-foam-extend-3.0, I'm seeing lots of changes when I pull:
Code:
git clone git://git.code.sf.net/p/openfoam-extend/OpenFOAM-1.6-ext Code:
~/foam/foam-extend-3.0 Best, Eric |
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December 19, 2013, 16:49 |
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#8 |
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Eric Bryant
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Location: Texas
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Now looking at:
http://wikki.gridcore.se/foam-extend/download should we be running steps from: http://openfoamwiki.net/index.php/In...u#Ubuntu_12.04 ... to use a system-installed paraview? Thank you |
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December 25, 2013, 07:10 |
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#9 |
Retired Super Moderator
Bruno Santos
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Greetings Eric,
I see that you've managed to install foam-extend 3.0, as you've indicated here: http://www.cfd-online.com/Forums/ope...tallation.html I'll try to have a look into this later this week, to out-date the old 1.6-ext instruction at openfoamwiki.net and to add the new instructions to it. Best regards, Bruno
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December 26, 2013, 13:12 |
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#10 | |
Retired Super Moderator
Bruno Santos
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@Felipe:
Quote:
Best regards, Bruno
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December 26, 2013, 19:44 |
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#11 | |
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Felipe Alves Portela
Join Date: Dec 2012
Location: FR
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Hey Bruno,
I'll try out your instructions but I'm sure I won't run into trouble thanks for the help! Indeed I'm trying to compile 1.6-ext, I wasn't even aware of the existence of extend-3.0, can you tell me were to find more info on it? (maybe pm?) Cheers and carry on the good work, Felipe Quote:
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December 26, 2013, 19:55 |
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#12 | |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
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Hi Felipe,
Quote:
And the current official repository is having some existential issues (thanks to Sourceforge.net's Allura dashboard system), but you can check the release notes in this unofficial mirror: https://github.com/Unofficial-Extend...oam-extend-3.0 Beyond this, have a look into the other thread by Eric: http://www.cfd-online.com/Forums/ope...tallation.html Best regards, Bruno
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