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[OpenFOAM.org] supercomputer parallel problem (I can not subjob!)

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Old   October 12, 2015, 09:45
Default supercomputer parallel problem (I can not subjob!)
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Dear foamers,

I am installing OF2.3.0 on supercomputer. But I suffer the same problem as others who had posted like: http://www.cfd-online.com/Forums/ope...entos-5-a.html. But the thing of my case is different , so I decide to post a new thread and wish someone reply me accordingly.

OF can run successfully with mpirun -np 4 interFoam -parallel on main(manage) node, but when I submit job to computing node the following error emerging.
Quote:
It looks like opal_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during opal_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

opal_shmem_base_select failed
--> Returned value -1 instead of OPAL_SUCCESS
--------------------------------------------------------------------------
[c12n5-ib:27601] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file runtime/orte_init.c at line 79
[c12n5-ib:27601] [[INVALID],INVALID] ORTE_ERROR_LOG: Error in file orterun.c at line 694
The compiler is : gcc 4.7.0
The openmpi is : openmpi 1.6.5
The supercomputer has been installed icc 14.0.0 itself. The bash file in my home is like this:
Code:
export LANG=C
export LD_LIBRARY_PATH=$HOME/software/gmp/lib:$HOME/software/mpfr/lib:$HOME/software/mpc/lib:$LD_LIBRARY_PATH
export LD_LIBRARY_PATH=$HOME/software/gcc/lib64:$LD_LIBRARY_PATH
export PATH=$HOME/software/gcc/bin:$PATH
export PATH=$HOME/software/cmake-2.8.12.2/bin:$PATH

#######openmpi#####
export PATH=$HOME/OpenFOAM/ThirdParty-2.3.0/openmpi-1.6.5/bin:$PATH
export MPI_PATH=$HOME/software/openmpi-1.6.5/lib
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HOME/software/openmpi-1.6.5/lib
source $HOME/OpenFOAM/OpenFOAM-2.3.0/etc/bashrc
Any reply is highly appreciated!

Best regards,
Wen
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