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Installation 1.5 as a user of server (New bird) |
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April 12, 2009, 20:57 |
Installation 1.5 as a user of server (New bird)
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#1 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I am only a user of a large computer server, and I execute the foamSystemCheck script in the bin/directory of the OpenFOAM installation.
Checking basic system... ----------------------------------------------- Shell: /bin/tcsh Host: jaerif OS: Linux version 2.6.5-7.283-sn2 User: e090012 System check: PASS ------------------ Continue OpenFOAM installation. Then I do Installation --------------------------------------- EITHER if running bash or ksh (if in doubt type echo $SHELL), source the etc/bashrc file by adding the following line to the end of your $HOME/.bashrc file: . $HOME/OpenFOAM/OpenFOAM-<VERSION>/etc/bashrc Then update the environment variables by sourcing the $HOME/.bashrc file by typing in the terminal: . $HOME/.bashrc OR if running tcsh or csh, source the etc/cshrc file by adding the following line to the end of your $HOME/.cshrc file: source $HOME/OpenFOAM/OpenFOAM-<VERSION>/etc/cshrc Then update the environment variables by sourcing the $HOME/.cshrc file by typing in the terminal: source $HOME/.cshrc ----------------------------------------- However, when I run the command $HOME/.bashrc or $HOME/.cshrc, it is not successful. /home/g2/e090012/.cshrc: Permission denied. is shown. What shall I do in the next step? Any suggestions? Thank you very much. |
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April 13, 2009, 00:54 |
any help
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#2 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I try again, and do the following:
change the file of .bashrc in /home/g2/e090012/.bashrc adding the following line to the end: .$HOME/OpenFOAM/OpenFOAM-1.5/etc/bashrc then update the environment variable by this command: .$HOME/.bashrc however, "./home/g2/eo90012/.bashrc: Command not found." is shown. in fact, ".bashrc" does exist there. So I change the property by: chmod 755 .bashrc Still be unsuccessful. How shall I do? I run this command: $PATH, the result is as follows. .:.:.:.:.:.:/usr/center/bin:/opt/vast/bin:/jaeri/app/toolworks/totalview/bin:/jaeri/lsf/6.2/linux2.6-glibc2.3-sn-ipf/etc:/jaeri/lsf/6.2/linux2.6-glibc2.3-sn-ipf/bin:/usr/kerberos/bin:/opt/intel/itac/7.1/bin:/opt/intel/ita/bin:/opt/intel/itc/bin:/opt/intel/vtune/bin:/opt/intel_fc/10.1.011/bin:/opt/intel_idb/10.1.011/bin:/opt/intel_cc/10.1.011/bin:/opt/histx_1.3b/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/X11R6/bin:/usr/games:/opt/gnome/bin:/opt/kde3/bin: Command not found. welcome any comment. |
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April 13, 2009, 02:04 |
any comments
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#3 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I also try to run the command with a blank like,
. $HOME/.bashrc but the result is .: Permission denied. What shall I do? I run this command: ls -l /home/g2/e090012/.bashrc the result is : -rwxrwxr-x 1 e090012 g0913 1364 Apr 13 16:11 /home/g2/e090012/.bashrc Any suggestions? Time is limited, I am very urgent now, can anybody give me suggestions? Last edited by chiven; April 13, 2009 at 03:50. |
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April 13, 2009, 06:07 |
.: Permission denies
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#4 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I have search many threads here, but all of the problems met by other friends are that some files or folders are Permission denied, so they can solve the problems easily, only by changing the characteristic of the files or folders.
However in my case, it is the "." which is " : Permission denies". How to solve this problem? |
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April 13, 2009, 06:57 |
try to compile $HOME/.cshrc
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#5 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
Then I try to change the $HOME/.cshrc, add the source $HOME/OpenFOAM/OpenFOAM-1.5/etc/cshrc at the last raw, like:
----------------------------------------------------- # # This is the default standard .cshrc provided to csh users. # They are expected to edit it to meet their own needs. # # The commands in this file are executed each time a new csh shell # is started. # umask 022 set path=(. $path) # list directories in columns #alias ls 'ls -C' alias cp 'cp -i' alias mv 'mv -i' alias rm 'rm -i' # Remember last 100 commands set history = 100 source $HOME/OpenFOAM/OpenFOAM-1.5/etc/cshrc -------------------------------------------------------- and run the command: source $HOME/.cshrc however, the result is as follows. ------------------------------------------------ jaerif g2/e090012> source $HOME/.cshrc : Command not found. umask: Improper mask. --------------------------------------------- What shall I do? |
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April 13, 2009, 08:59 |
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#6 |
Senior Member
Hua Zen
Join Date: Mar 2009
Posts: 138
Rep Power: 17 |
For this problem,I think you'd better to ask for the system administrator for help.It's not OF related.
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April 13, 2009, 09:08 |
Thanks
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#7 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
Thanks for lin's reply.
But the problem is very queer. And I think the system administrator doesn't understand the FOAM. Now, I am trying to install FOAM in another server. Any other comments? |
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April 13, 2009, 09:54 |
The same problem
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#8 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I try to install OpenFOAM in another server, the same problem is met. It is very intereting.
------------------------------------------- [e090012@jaeripca ~]$ source $HOME/.cshrc : Command not found. umask: Improper mask. ------------------------------------------- I have to go back and have a supper. Good night everybody, and see you tomorrow. |
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April 14, 2009, 07:39 |
Insteresting
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#9 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I found an interesting thing.
I run the "foamInstallationTest" successfully in a server once, however, when I try to run it again, fail. Another question, Now I can run the source "$HOME/.cshrc" successfully, but after that, I run "foamInstallationTest", the results are __________________________________________________ ______________ Checking basic setup... ----------------------------------------------------------------------- FATAL ERROR: OpenFOAM environment not configured. Please refer to the installation section of the README file: <OpenFOAM installation dir>/OpenFOAM-1.5/README to source the OpenFOAM environment. __________________________________________________ ______________ And I check the file of ".cshrc", which is shown in follows. __________________________________________________ ______________ # # This is the default standard .cshrc provided to csh users. # They are expected to edit it to meet their own needs. # # The commands in this file are executed each time a new csh shell # is started. # umask 022 set path=(. $path) # list directories in columns #alias ls 'ls -C' alias cp 'cp -i' alias mv 'mv -i' alias rm 'rm -i' # Remember last 100 commands set history = 100 source $HOME/OpenFOAM/OpenFOAM-1.5/etc/cshrc __________________________________________________ ________________ I can not find any problem there. Helps. |
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April 14, 2009, 09:05 |
very interesting
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#10 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
I try again and again, I revised the file of .cshrc as follows.
__________________________________________________ __________________________________________________ _________ # # This is the default standard .cshrc provided to csh users. # They are expected to edit it to meet their own needs. # # The commands in this file are executed each time a new csh shell # is started. # umask 022 #set path=(. $path) # list directories in columns #alias ls 'ls -C' alias cp 'cp -i' alias mv 'mv -i' alias rm 'rm -i' # Remember last 100 commands set history = 100 #source $HOME/OpenFOAM/OpenFOAM-1.5/etc/cshrc #source /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/etc/cshrc setenv PATH $PATH:OpenFOAM/OpenFOAM-1.5/etc/cshrc __________________________________________________ __________________________________________________ __________ suddenly the command of "foamInstallationTest" can be run, and the results are shown in following. __________________________________________________ ___________________ jaerif OpenFOAM-1.5/bin> foamInstallationTestExecuting /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/bin/foamInstallationTest: Checking basic setup... ------------------------------------------------------------------------------- Shell: tcsh Host: jaerif OS: Linux version 2.6.5-7.283-sn2 ------------------------------------------------------------------------------- Checking main OpenFOAM env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /home/g2/e090012/OpenFOAM yes yes $WM_PROJECT_USER_DIR /home/g2/e090012/OpenFOAM/e090012-1.5 yes no $WM_THIRD_PARTY_DIR /home/g2/e090012/OpenFOAM/ThirdParty yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /home/g2/e090012/OpenFOAM/OpenFOAM-1.5 yes yes yes $FOAM_APPBIN ...5/applications/bin/linuxIA64I64DPOpt yes yes yes $FOAM_USER_APPBIN ...5/applications/bin/linuxIA64I64DPOpt yes yes no $WM_DIR .../e090012/OpenFOAM/OpenFOAM-1.5/wmake yes yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN ...M/OpenFOAM-1.5/lib/linuxIA64I64DPOpt yes yes yes $FOAM_USER_LIBBIN ...AM/e090012-1.5/lib/linuxIA64I64DPOpt yes yes no $MPI_ARCH_PATH --------- env variable not set --------- yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- WARNING: gcc version does not match gcc supplied with this release of OpenFOAM Supplied version: 4.3.1 User version : 3.3.3 Minimum required: 4.2.0 gcc 3.3.3 WARNING: Conflicting installations: OpenFOAM settings : /bin/gcc current path : /usr/bin/gcc CRITICAL ERROR gzip 1.3.5 /usr/bin/gzip tar 1.13.25 /bin/tar icoFoam WARNING: Conflicting installations: OpenFOAM settings : /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxIA64I64DPOpt/icoFoam current path : CRITICAL ERROR ------------------------------------------------------------------------------- Checking networking... ------------------------------------------------------------------------------- Action Result Crit ------------------------------------------------------------------------------- Pinging_jaerif Successful yes Pinging_localHost Successful yes Test_rsh: Unsuccessful_connection_refused* yes Test_ssh: Successful yes (*) Only one of rsh or ssh is required by the OpenFOAM enviroment. ------------------------------------------------------------------------------- Base configuration ok. The foam installation contains 2 critical error(s). Review the output for warning messages and consult the installation guide for trouble shooting. done. jaerif OpenFOAM-1.5/bin> __________________________________________________ ___________________ I really hope the experts can give some suggestions to me. Thanks in advance. Have a sweet dream, everybody. Last edited by chiven; April 14, 2009 at 21:15. |
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April 14, 2009, 22:35 |
Sime results
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#11 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
Now I understand the errors before are resulted by my using ftp to edit the file. Now I am using the editor of vi, everything seems OK.
And I use this command to update the environment variables: #setenv PATH /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/ect/cshrc Here are the results. ---------------------------------------------------------------------------------------------------------------------------------------------- Executing /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/bin/foamInstallationTest: Checking basic setup... ------------------------------------------------------------------------------- Shell: tcsh Host: jaerif OS: Linux version 2.6.5-7.283-sn2 ------------------------------------------------------------------------------- Checking main OpenFOAM env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /home/g2/e090012/OpenFOAM yes yes $WM_PROJECT_USER_DIR /home/g2/e090012/OpenFOAM/e090012-1.5 yes no $WM_THIRD_PARTY_DIR /home/g2/e090012/OpenFOAM/ThirdParty yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /home/g2/e090012/OpenFOAM/OpenFOAM-1.5 yes yes yes $FOAM_APPBIN ...5/applications/bin/linuxIA64I64DPOpt yes yes yes $FOAM_USER_APPBIN ...5/applications/bin/linuxIA64I64DPOpt yes yes no $WM_DIR .../e090012/OpenFOAM/OpenFOAM-1.5/wmake yes yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN ...M/OpenFOAM-1.5/lib/linuxIA64I64DPOpt yes yes yes $FOAM_USER_LIBBIN ...AM/e090012-1.5/lib/linuxIA64I64DPOpt yes yes no $MPI_ARCH_PATH --------- env variable not set --------- yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- WARNING: gcc version does not match gcc supplied with this release of OpenFOAM Supplied version: 4.3.1 User version : 3.3.3 Minimum required: 4.2.0 gcc 3.3.3 WARNING: Conflicting installations: OpenFOAM settings : /bin/gcc current path : /usr/bin/gcc CRITICAL ERROR gzip 1.3.5 /usr/bin/gzip tar 1.13.25 /bin/tar icoFoam WARNING: Conflicting installations: OpenFOAM settings : /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/applications/bin/linuxIA64I64DPOpt/icoFoam current path : CRITICAL ERROR ------------------------------------------------------------------------------- Checking networking... ------------------------------------------------------------------------------- Action Result Crit ------------------------------------------------------------------------------- Pinging_jaerif Successful yes Pinging_localHost Successful yes Test_rsh: Unsuccessful_connection_refused* yes Test_ssh: Successful yes (*) Only one of rsh or ssh is required by the OpenFOAM enviroment. ------------------------------------------------------------------------------- Base configuration ok. The foam installation contains 2 critical error(s). Review the output for warning messages and consult the installation guide for trouble shooting. done. ---------------------------------------------------------------------------------------------------------------------------------------------- |
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April 15, 2009, 06:27 |
more better now
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#12 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
adding the following line to the end of your $HOME/.cshrc file is also OK now:
source $HOME/OpenFOAM/OpenFOAM-1.5/etc/cshrc before there, i have to run the command to define WM_COMPILER_DIR: setenv WM_COMPILER_DIR /home/g2/e090012/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/bin/ |
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April 19, 2009, 23:51 |
Install in VMware
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#13 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
Executing /home/cai/OpenFOAM/OpenFOAM-1.5/bin/foamInstallationTest:
Checking basic setup... ------------------------------------------------------------------------------- Shell: bash Host: linux-jobm OS: Linux version 2.6.22.19-0.2-default ------------------------------------------------------------------------------- Checking main OpenFOAM env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /home/cai/OpenFOAM yes yes $WM_PROJECT_USER_DIR /home/cai/OpenFOAM/cai-1.5 yes no $WM_THIRD_PARTY_DIR /home/cai/OpenFOAM/ThirdParty yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /home/cai/OpenFOAM/OpenFOAM-1.5 yes yes yes $FOAM_APPBIN ...M-1.5/applications/bin/linuxGccDPOpt yes yes yes $FOAM_USER_APPBIN ...i-1.5/applications/bin/linuxGccDPOpt yes yes no $WM_DIR /home/cai/OpenFOAM/OpenFOAM-1.5/wmake yes yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN ...nFOAM/OpenFOAM-1.5/lib/linuxGccDPOpt yes yes yes $FOAM_USER_LIBBIN ...i/OpenFOAM/cai-1.5/lib/linuxGccDPOpt yes yes no $MPI_ARCH_PATH ...penmpi-1.2.6/platforms/linuxGccDPOpt yes yes yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- gcc 4.3.1 .../OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux/bin/gcc gzip 1.3.12 /usr/bin/gzip tar 1.17 /bin/tar icoFoam 1.5 ...AM/OpenFOAM-1.5/applications/bin/linuxGccDPOpt/icoFoam ------------------------------------------------------------------------------- Checking networking... ------------------------------------------------------------------------------- Action Result Crit ------------------------------------------------------------------------------- Pinging_linux-jobm Successful yes Pinging_localHost Successful yes Test_rsh: Unsuccessful_connection_refused* yes Test_ssh: Successful yes (*) Only one of rsh or ssh is required by the OpenFOAM enviroment. ------------------------------------------------------------------------------- Base configuration ok. Critical systems ok. done. cai@linux-jobm:~/OpenFOAM/cai-1.5/run/tutorials/icoFoam/cavity> blockMesh /*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 1.5 | | \\ / A nd | Web: http://www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Exec : blockMesh Date : Apr 18 2009 Time : 04:01:28 Host : linux-jobm PID : 11331 Case : /home/cai/OpenFOAM/cai-1.5/run/tutorials/icoFoam/cavity nProcs : 1 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Reading block mesh description dictionary Creating block mesh Creating blockCorners Creating curved edges Creating blocks Creating patches Creating block mesh topology Default patch type set to empty Check block mesh topology Basic statistics Number of internal faces : 0 Number of boundary faces : 6 Number of defined boundary faces : 6 Number of undefined boundary faces : 0 Checking patch -> block consistency Creating block offsets Creating merge list . Creating points Creating cells Creating patches Creating mesh from block mesh Default patch type set to empty Writing polyMesh end cai@linux-jobm:~/OpenFOAM/cai-1.5/run/tutorials/icoFoam/cavity> cai@linux-jobm:~/OpenFOAM/cai-1.5/run/tutorials/icoFoam/cavity> paraFoam paraview: error while loading shared libraries: libQtAssistantClient.so.4: cannot open shared object file: No such file or directory however, I can use paraview directly by changing it ti VTK form. blockMesh chechMesh icofoam >& log & cat log foamToVTK paraview therefore, there maybe an conflict between the QT version and paraview 3.3. anyway, it is basically successful, congratulations. good luck Last edited by chiven; April 21, 2009 at 08:31. |
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April 21, 2009, 08:16 |
new progress
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#14 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
Today, I revise the file of "~/OpenFOAM/OpenFOAM-1.5/etc/cshrc" as following part:
---------------------------------------------------------------- case ia64: # setenv WM_ARCH linuxIA64 setenv WM_ARCH linux64 # setenv WM_COMPILER I64 breaksw ---------------------------------------------------------------- then run foamInstallationTest in the /etc/ directory successfully, the results are shown as follows. --------------------------------------------------------------------- jaerif OpenFOAM-1.5/bin> foamInstallationTest Executing /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/bin/foamInstallationTest: Checking basic setup... ------------------------------------------------------------------------------- Shell: tcsh Host: jaerif OS: Linux version 2.6.5-7.283-sn2 ------------------------------------------------------------------------------- Checking main OpenFOAM env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /home/g2/e090012/OpenFOAM yes yes $WM_PROJECT_USER_DIR /home/g2/e090012/OpenFOAM/e090012-1.5 yes no $WM_THIRD_PARTY_DIR /home/g2/e090012/OpenFOAM/ThirdParty yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /home/g2/e090012/OpenFOAM/OpenFOAM-1.5 yes yes yes $FOAM_APPBIN ...1.5/applications/bin/linux64GccDPOpt yes yes yes $FOAM_USER_APPBIN ...1.5/applications/bin/linux64GccDPOpt yes yes no $WM_DIR .../e090012/OpenFOAM/OpenFOAM-1.5/wmake yes yes yes ------------------------------------------------------------------------------- Checking the OpenFOAM env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN ...OAM/OpenFOAM-1.5/lib/linux64GccDPOpt yes yes yes $FOAM_USER_LIBBIN ...FOAM/e090012-1.5/lib/linux64GccDPOpt yes yes no $MPI_ARCH_PATH ...nmpi-1.2.6/platforms/linux64GccDPOpt yes yes yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- WARNING: gcc version does not match gcc supplied with this release of OpenFOAM Supplied version: 4.3.1 User version : Minimum required: 4.2.0 gcc ...penFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/bin/gcc gzip 1.3.5 /usr/bin/gzip tar 1.13.25 /bin/tar icoFoam .../OpenFOAM-1.5/applications/bin/linux64GccDPOpt/icoFoam ------------------------------------------------------------------------------- Checking networking... ------------------------------------------------------------------------------- Action Result Crit ------------------------------------------------------------------------------- Pinging_jaerif Successful yes Pinging_localHost Successful yes Test_rsh: Unsuccessful_connection_refused* yes Test_ssh: Successful yes (*) Only one of rsh or ssh is required by the OpenFOAM enviroment. ------------------------------------------------------------------------------- Base configuration ok. Critical systems ok. done. ----------------------------------------------------------------------- however, when i try to run the case of cavity, i is not OK. the results like, ----------------------------------------------------------------------- jaerif tutorials/icoFoam> cd cavity jaerif icoFoam/cavity> blockMesh /home/g2/e090012/OpenFOAM/OpenFOAM-1.5/applications/bin/linux64GccDPOpt/blockMesh: Exec format error. Binary file not executable. ----------------------------------------------------------------------- I check the gcc version, it also show binary file is not executable as follows. --------------------------------------------------------------------------------------------------------------------- jaerif OpenFOAM-1.5/bin> gcc version /home/g2/e090012/OpenFOAM/ThirdParty/gcc-4.3.1/platforms/linux64/bin/gcc: Exec format error. Binary file not executable. --------------------------------------------------------------------------------------------------------------------- I think for this ia64 linux platform, i have to rebuild the complete OpenFOAM from the source-pack by myself. good luck. Last edited by chiven; April 21, 2009 at 22:19. |
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April 22, 2009, 07:29 |
buildParaView3.3-cvs problem
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#15 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
-- Build files have been written to: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/platforms/linuxGcc
Scanning dependencies of target vtksys [ 0%] Building C object VTK/Utilities/kwsys/CMakeFiles/vtksys.dir/ProcessUNIX.o In file included from /usr/include/signal.h:333, from /usr/include/sys/wait.h:31, from /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:56: /usr/include/bits/sigcontext.h:28:29: error: asm/sigcontext.h: No such file or directory In file included from /usr/include/errno.h:36, from /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:60: /usr/include/bits/errno.h:25:26: error: linux/errno.h: No such file or directory In file included from /usr/include/bits/posix1_lim.h:153, from /usr/include/dirent.h:232, from /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:63: /usr/include/bits/local_lim.h:36:26: error: linux/limits.h: No such file or directory /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘vtksysProcess_Execute’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:730: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:730: error: (Each undeclared identifier is reported only once /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:730: error: for each function it appears in.) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessWaitForPipe’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1036: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘vtksysProcess_Kill’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1347: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessCleanup’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1465: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessCleanupDescriptor’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1512: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessClosePipes’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1540: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessCreate’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1733: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessDestroy’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:1779: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessFork’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:2278: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessesAdd’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:2555: error: ‘EINTR’ undeclared (first use in this function) /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c: In function ‘kwsysProcessesRemove’: /home/cai/OpenFOAM/ThirdParty/ParaView3.3-cvs/VTK/Utilities/kwsys/ProcessUNIX.c:2592: error: ‘EINTR’ undeclared (first use in this function) make[2]: *** [VTK/Utilities/kwsys/CMakeFiles/vtksys.dir/ProcessUNIX.o] Error 1 make[1]: *** [VTK/Utilities/kwsys/CMakeFiles/vtksys.dir/all] Error 2 make: *** [all] Error 2 done |
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April 26, 2009, 22:33 |
done
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#16 |
Senior Member
J. Cai
Join Date: Apr 2009
Posts: 180
Rep Power: 17 |
for the SUSE 10.3 platform, it only need to compile the paraview 3.3, it is OK.
and for the IA64 platform, it need to rebuild the OpenFOAM from the source codes. Special thanks to Dr Wei in Tongji University, China. Good luck everybody. |
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