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loading issue libraries:libsimpleFunctionObjects.so libsimpleSwakFunctionObjects.so |
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August 10, 2015, 05:30 |
loading issue libraries:libsimpleFunctionObjects.so libsimpleSwakFunctionObjects.so
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#1 |
Senior Member
Ehsan
Join Date: Oct 2012
Location: Iran
Posts: 2,208
Rep Power: 27 |
when I use the command decomposePar this Warning occurs on loading of two libraries:
Code:
Create time --> FOAM Warning : From function dlOpen(const fileName&, const bool) in file POSIX.C at line 1179 dlopen error : libsimpleFunctionObjects.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function dlLibraryTable::open(const fileName&, const bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 99 could not load "libsimpleFunctionObjects.so" --> FOAM Warning : From function dlOpen(const fileName&, const bool) in file POSIX.C at line 1179 dlopen error : libsimpleSwakFunctionObjects.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function dlLibraryTable::open(const fileName&, const bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 99 could not load "libsimpleSwakFunctionObjects.so" Decomposing mesh region0 Create mesh Calculating distribution of cells Selecting decompositionMethod simple Finished decomposition in 0.01 s Calculating original mesh data Distributing cells to processors Distributing faces to processors Distributing points to processors Constructing processor meshes --> FOAM Warning : From function dlOpen(const fileName&, const bool) in file POSIX.C at line 1179 dlopen error : libsimpleFunctionObjects.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function dlLibraryTable::open(const fileName&, const bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 99 could not load "libsimpleFunctionObjects.so" --> FOAM Warning : From function dlOpen(const fileName&, const bool) in file POSIX.C at line 1179 dlopen error : libsimpleSwakFunctionObjects.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function dlLibraryTable::open(const fileName&, const bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 99 could not load "libsimpleSwakFunctionObjects.so" Processor 0 Number of cells = 9450 Number of faces shared with processor 1 = 54 Number of processor patches = 1 Number of processor faces = 54 Number of boundary faces = 19304 --> FOAM Warning : From function dlOpen(const fileName&, const bool) in file POSIX.C at line 1179 dlopen error : libsimpleFunctionObjects.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function dlLibraryTable::open(const fileName&, const bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 99 could not load "libsimpleFunctionObjects.so" --> FOAM Warning : From function dlOpen(const fileName&, const bool) in file POSIX.C at line 1179 dlopen error : libsimpleSwakFunctionObjects.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function dlLibraryTable::open(const fileName&, const bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 99 could not load "libsimpleSwakFunctionObjects.so" Code:
libs ( "libOpenFOAM.so" "libgroovyBC.so" "libsimpleFunctionObjects.so" "libsimpleSwakFunctionObjects.so" "libswakFunctionObjects.so" "libfieldFunctionObjects.so" "libswakThermoTurbFunctionPlugin.so" ); thanks so much.
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Injustice Anywhere is a Threat for Justice Everywhere.Martin Luther King. To Be or Not To Be,Thats the Question! The Only Stupid Question Is the One that Goes Unasked. |
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August 10, 2015, 05:36 |
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#2 |
Senior Member
anonymous
Join Date: Aug 2014
Posts: 205
Rep Power: 13 |
Did you install swak4foam? Are all these libraries located in your $FOAM_USER_LIBBIN or $FOAM_LIBBIN directories?
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August 10, 2015, 06:49 |
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#3 |
Senior Member
Ehsan
Join Date: Oct 2012
Location: Iran
Posts: 2,208
Rep Power: 27 |
thanks for reply.
yes swak4Foam seems to has installed properly: Code:
ehsan@ehsan-N56JK:~/OpenFoam_Cases/kOmegaSST-WR$ funkySetFields /*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.4.0 | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : 2.4.0-dcea1e13ff76 Exec : funkySetFields Date : Aug 10 2015 Time : 15:16:13 Host : "ehsan-N56JK" PID : 6950 Case : /home/ehsan/OpenFoam_Cases/kOmegaSST-WR nProcs : 1 sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Allowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // swakVersion: 0.3.2 (Release date: 2015-05-31) // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // --> FOAM FATAL ERROR: funkySetFields: time/latestTime option is required From function main() in file funkySetFields.C at line 723. FOAM exiting thanks a lot.
__________________
Injustice Anywhere is a Threat for Justice Everywhere.Martin Luther King. To Be or Not To Be,Thats the Question! The Only Stupid Question Is the One that Goes Unasked. |
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August 10, 2015, 08:32 |
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#4 |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,978
Blog Entries: 45
Rep Power: 128 |
Greetings to all!
@Ehsan: Having funkySetFields working is not a guaranteed that the libraries were built. Go back to the source code folder for "swak4Foam" and run: Code:
./Allwmake > log.make 2>&1 Check the content of the new file "log.make" with a text editor. It should tell you something like this: Code:
Previously compiled for OpenFOAM 2.4.0 No file 'swakConfiguration'. Python etc won't work. See README for details Try 'ln -s swakConfiguration.automatic swakConfiguration' for automatic configuration. BEWARE: this does not work on some systems Checking swak4Foam-version and generating file abort: no repository found in '/home/ofuser/OpenFOAM/ofuser-2.4.0/swak4Foam' (.hg not found)! Swak version is 0.3.2 Bison is version 2.5 Flex is version 2.5.35 (Minor version: 35) OpenFOAM-version: Major 2 Minor 4 Patch 0 (-1 == x / 0) No change to swak4FoamParsers/foamVersion4swak.H '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswak4FoamParsers.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakLagrangianParser.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libgroovyBC.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakFunctionObjects.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleFunctionObjects.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleLagrangianFunctionObjects.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleSearchableSurfaces.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleSwakFunctionObjects.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakTopoSources.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakSourceFields.so' is up to date. Compiling swakFvOptions '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakFvOptions.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libgroovyStandardBCs.so' is up to date. SWAK_PYTHON_INCLUDE not defined .... no Python-Integration. Most people are fine without it '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakChemistryModelFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakFvcSchemesFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakLagrangianCloudSourcesFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakLocalCalculationsFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakMeshQualityFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakMeshWaveFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakRadiationModelFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakRandomFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakSurfacesAndSetsFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakThermoTurbFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakTransportTurbFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakVelocityFunctionPlugin.so' is up to date. '/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/lib/libswakCoalCloudAdaptor.so' is up to date. If you have your own function-plugins you can specify them using the SWAK_USER_PLUGINS environment variable and they would be compiled now. If you don't know what this means: don't bother. You propably don't need it SWAK_PYTHON_INCLUDE not defined .... no Python-Integration. Utility funkyPythonPostproc not compiled make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/funkyDoCalc' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/funkySetBoundaryField' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/funkySetFields' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/funkySetLagrangianField' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/calcNonUniformOffsetsForMapped' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/fieldReport' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/replayTransientBC' is up to date. make[1]: `/home/ofuser/OpenFOAM/ofuser-2.4.0/platforms/linux64GccDPOpt/bin/funkyWarpMesh' is up to date. If you want to use swakCoded-function object or compile software based on swak set the environment variable SWAK4FOAM_SRC to /home/ofuser/OpenFOAM/ofuser-2.4.0/swak4Foam/Libraries (most people will be fine without setting that variable) Best regards, Bruno
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August 10, 2015, 10:43 |
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#5 |
Senior Member
Ehsan
Join Date: Oct 2012
Location: Iran
Posts: 2,208
Rep Power: 27 |
thanks. I had a folder of swak4Foam on desktop folder that its log said that some needed files didn't exist and it had a error. but another folder of swak4Foam seems ok and I wcleaned and wmaked it again and the output seems correct as this:
Code:
Previously compiled for OpenFOAM 2.4.0 /home/ehsan/swak4Foam_2.x/privateRequirements/bin existing. Prepending to PATH-variable (private version of Bison) No file 'swakConfiguration'. Python etc won't work. See README for details Try 'ln -s swakConfiguration.automatic swakConfiguration' for automatic configuration. BEWARE: this does not work on some systems Checking swak4Foam-version and generating file Swak version is 0.3.2 Bison is version 2.7.12-4996 Flex is version 2.5.35 (Minor version: 35) OpenFOAM-version: Major 2 Minor 4 Patch 0 (-1 == x / 0) No change to swak4FoamParsers/foamVersion4swak.H '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswak4FoamParsers.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakLagrangianParser.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libgroovyBC.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakFunctionObjects.so' is up to date. Making dependency list for source file misc/listMeshData/listMeshDataFunctionObject.C /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: 50: /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: cannot create misc/listMeshData/listMeshDataFunctionObject.dep: Permission denied /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: 55: /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: cannot create misc/listMeshData/listMeshDataFunctionObject.dep: Permission denied /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: 59: /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: cannot create misc/listMeshData/listMeshDataFunctionObject.dep: Permission denied /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: 60: /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: cannot create misc/listMeshData/listMeshDataFunctionObject.dep: Permission denied /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: 61: /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: cannot create misc/listMeshData/listMeshDataFunctionObject.dep: Permission denied /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: 62: /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/scripts/addCompile: cannot create misc/listMeshData/listMeshDataFunctionObject.dep: Permission denied make: *** [misc/listMeshData/listMeshDataFunctionObject.dep] Error 2 '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleLagrangianFunctionObjects.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleSearchableSurfaces.so' is up to date. /usr/bin/ld: cannot find -lsimpleFunctionObjects collect2: error: ld returned 1 exit status make: *** [/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libsimpleSwakFunctionObjects.so] Error 1 '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakTopoSources.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakSourceFields.so' is up to date. Compiling swakFvOptions '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakFvOptions.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libgroovyStandardBCs.so' is up to date. SWAK_PYTHON_INCLUDE not defined .... no Python-Integration. Most people are fine without it '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakChemistryModelFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakFvcSchemesFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakLagrangianCloudSourcesFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakLocalCalculationsFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakMeshQualityFunctionPlugin.so' is up to date. mkdir: cannot create directory ‘linux64GccDPOpt’: Permission denied /bin/sh: 1: cannot create linux64GccDPOpt/options: Directory nonexistent make: *** [linux64GccDPOpt/options] Error 2 /home/ehsan/OpenFOAM/OpenFOAM-2.4.0/wmake/MakefileFiles:40: linux64GccDPOpt/options: No such file or directory make: *** No rule to make target `linux64GccDPOpt/options'. Stop. wmake error: file 'Make/linux64GccDPOpt/objectFiles' could not be created in /home/ehsan/swak4Foam_2.x/Libraries/functionPlugins/swakMeshWaveFunctionPlugin '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakRadiationModelFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakRandomFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakSurfacesAndSetsFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakThermoTurbFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakTransportTurbFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakVelocityFunctionPlugin.so' is up to date. '/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib/libswakCoalCloudAdaptor.so' is up to date. If you have your own function-plugins you can specify them using the SWAK_USER_PLUGINS environment variable and they would be compiled now. If you don't know what this means: don't bother. You propably don't need it make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/calcNonUniformOffsetsForMapped' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/calcNonUniformOffsetsForMapped' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/calcNonUniformOffsetsForMapped' make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/fieldReport' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/fieldReport' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/fieldReport' make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/funkyDoCalc' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/funkyDoCalc' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/funkyDoCalc' SWAK_PYTHON_INCLUDE not defined .... no Python-Integration. Utility funkyPythonPostproc not compiled make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/funkySetBoundaryField' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/funkySetBoundaryField' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/funkySetBoundaryField' make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/funkySetFields' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/funkySetFields' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/funkySetFields' make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/funkySetLagrangianField' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/funkySetLagrangianField' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/funkySetLagrangianField' make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/funkyWarpMesh' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/funkyWarpMesh' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/funkyWarpMesh' make[1]: Entering directory `/home/ehsan/swak4Foam_2.x/Utilities/replayTransientBC' make[1]: `/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/bin/replayTransientBC' is up to date. make[1]: Leaving directory `/home/ehsan/swak4Foam_2.x/Utilities/replayTransientBC' If you want to use swakCoded-function object or compile software based on swak set the environment variable SWAK4FOAM_SRC to /home/ehsan/swak4Foam_2.x/Libraries (most people will be fine without setting that variable) Code:
/home/ehsan/OpenFOAM/ehsan-2.4.0/platforms/linux64GccDPOpt/lib
__________________
Injustice Anywhere is a Threat for Justice Everywhere.Martin Luther King. To Be or Not To Be,Thats the Question! The Only Stupid Question Is the One that Goes Unasked. |
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August 10, 2015, 10:58 |
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#6 |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,978
Blog Entries: 45
Rep Power: 128 |
Either you're running out of disk space, of the permissions for the folders are wrong. For fixing the permissions, run:
Code:
chown -R $USER:$USER /home/ehsan/swak4Foam_2.x chown -R $USER:$USER /home/$USER/OpenFOAM/$USER-2.4.0 If you're having problems with disk space and since you built OpenFOAM 2.4.0 from source code, you can remove some of the files that aren't needed, namely the sub-folder "ThirdParty-2.4.0/build": Code:
foam3rdParty rm -r build |
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August 10, 2015, 13:37 |
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#7 |
Senior Member
Ehsan
Join Date: Oct 2012
Location: Iran
Posts: 2,208
Rep Power: 27 |
dear Bruno it seems the first command can't be done. I think permissions be wrong too because I used a folder I have from previous installation because some problems in download a new one. and ther is now disc space shortage. the Linux drive has 200 GB space.
its the message after run the first command: Code:
atingSplash/constant/polyMesh/boundary’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/groovyBC/circulatingSplash/system/fvSolution’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/groovyBC/wobbler/constant/polyMesh/boundary’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0/U’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0/epsilon’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0/k’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0/p’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0/nut’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0/nuTilda’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/0’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/constant/transportProperties’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/constant/polyMesh/blockMeshDict’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/constant/polyMesh’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/constant/RASProperties’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/constant’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/system/fvSolution’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/system/fvSchemes’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/system/controlDict’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched/system’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes/pitzDailyTimeSwitched’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Examples/manipulateFvSolutionFvSchemes’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/releaseTesting/initScriptUbuntu.sh’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/releaseTesting/initScriptCentOS.sh’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/releaseTesting/Vagrantfile’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Documentation/swak4FoamReference.org’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/.hgsigs’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/.hgtags’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/README.md’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/debian/changelog.template’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/debian/rules.template’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/swakConfiguration.automatic’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/maintainanceScripts/makeSwakVersionFile.py’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/maintainanceScripts/make-releases.sh’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/maintainanceScripts/makeCopyrightEntries.py’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/maintainanceScripts/injectIntoDistro.py’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkySetFields/funkySetFields.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkyPythonPostproc/funkyPythonPostproc.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkySetLagrangianField/funkySetLagrangianField.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkyDoCalc/funkyDoCalc.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkySetBoundaryField/funkySetBoundaryField.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkyWarpMesh/funkyWarpMesh.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/Utilities/funkySetAreaFields/funkySetAreaFields.C’: Operation not permitted chown: changing ownership of ‘/home/ehsan/swak4Foam_2.x/README’: Operation not permitted
__________________
Injustice Anywhere is a Threat for Justice Everywhere.Martin Luther King. To Be or Not To Be,Thats the Question! The Only Stupid Question Is the One that Goes Unasked. |
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August 10, 2015, 14:30 |
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#9 |
Senior Member
Ehsan
Join Date: Oct 2012
Location: Iran
Posts: 2,208
Rep Power: 27 |
thank you ;-) I used sudo before the first and compiled it sooner you say it :-D
and both libraries are created in the folder.
__________________
Injustice Anywhere is a Threat for Justice Everywhere.Martin Luther King. To Be or Not To Be,Thats the Question! The Only Stupid Question Is the One that Goes Unasked. |
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February 25, 2016, 20:50 |
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#10 |
New Member
Colombia
Join Date: Jul 2013
Posts: 4
Rep Power: 13 |
Hi Guys,
I have the same problem with the same libraries and I tried the CHOWN commands but I am not sure if there was any change. Can you help me? Thank You. |
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March 6, 2016, 09:59 |
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#11 | |
Retired Super Moderator
Bruno Santos
Join Date: Mar 2009
Location: Lisbon, Portugal
Posts: 10,978
Blog Entries: 45
Rep Power: 128 |
Quick answer:
Quote:
If you don't provide more details, then I'm not able to accurately guess what happened.
__________________
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September 4, 2019, 12:22 |
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#12 |
Senior Member
alberto
Join Date: Apr 2016
Location: Mexico
Posts: 119
Rep Power: 10 |
Hello Bruno,
I have a similar problem, could you help me? when I try to run mi case in fe40, I got this: Create time --> FOAM Warning : From function dlLibraryTable:pen(const fileName& functionLibName) in file db/dlLibraryTable/dlLibraryTable.C at line 124 could not load libgroovyBC.so: cannot open shared object file: No such file or directory Create mesh for time = 0 And when I check mi log.make I got this: Current OpenFOAM version is 4.0. Previously compiled for OpenFOAM (4.0) /home/mapache/foam/mapache-4.0/swak4Foam/privateRequirements/bin existing. Prepending to PATH-variable (private version of Bison) No file 'swakConfiguration'. Python etc won't work. See README for details Try 'ln -s swakConfiguration.automatic swakConfiguration' for automatic configuration. BEWARE: this does not work on some systems Checking swak4Foam-version and generating file Swak version is 0.4.2 hg info: f71cfc465c71 Bison: /home/mapache/foam/mapache-4.0/swak4Foam/privateRequirements/bin/bison Flex: /usr/bin/flex Bison is version 3.0.4 Flex is version 2.6.4 (Minor version: 4) OpenFOAM-version: Major 4 Minor 0 Patch 0 (-1 == x / 0) Fork: extend No change to swak4FoamParsers/foamVersion4swak.H Please include the output above when reporting a problem in the compilation. It helps diagnosing the problem '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswak4FoamParsers.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakLagrangianParser.so' is up to date. SOURCE=groovyBCFvPatchFields.C ; g++-5 -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-200 -IMake/linux64GccDPOpt -DFOAM_DEV -I/home/mapache/foam/foam-extend-4.0/src/finiteVolume/lnInclude -I/home/mapache/foam/foam-extend-4.0/src/surfMesh/lnInclude -I/home/mapache/foam/foam-extend-4.0/src/sampling/lnInclude -I/home/mapache/foam/foam-extend-4.0/src/meshTools/lnInclude -I/home/mapache/foam/foam-extend-4.0/src/immersedBoundary/immersedBoundary/lnInclude -I../swak4FoamParsers/lnInclude/ -IlnInclude -I. -I/home/mapache/foam/foam-extend-4.0/src/foam/lnInclude -I/home/mapache/foam/foam-extend-4.0/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/groovyBCFvPatchFields.o In file included from groovyBCFvPatchFields.H:35:0, from groovyBCFvPatchFields.C:34: groovyBCFvPatchField.H:144:27: error: ‘>>’ should be ‘> >’ within a nested template argument list virtual tmp<Field<Type>> patchNeighbourField() const; ^ In file included from groovyBCFvPatchField.H:166:0, from groovyBCFvPatchFields.H:35, from groovyBCFvPatchFields.C:34: groovyBCFvPatchField.C:223:15: error: ‘>>’ should be ‘> >’ within a nested template argument list tmp<Field<Type>> groovyBCFvPatchField<Type>:atchNeighbourField() const ^ groovyBCFvPatchFields.dep:694: recipe for target 'Make/linux64GccDPOpt/groovyBCFvPatchFields.o' failed make: *** [Make/linux64GccDPOpt/groovyBCFvPatchFields.o] Error 1 '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakFunctionObjects.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libsimpleFunctionObjects.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libsimpleLagrangianFunctionObjects.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libsimpleSearchableSurfaces.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libsimpleSwakFunctionObjects.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakTopoSources.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakDynamicMesh.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakSourceFields.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakFiniteArea.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakStateMachine.so' is up to date. /usr/bin/ld: no se puede encontrar -lgroovyBC collect2: error: ld returned 1 exit status /home/mapache/foam/foam-extend-4.0/wmake/Makefile:186: recipe for target '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libgroovyStandardBCs.so' failed make: *** [/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libgroovyStandardBCs.so] Error 1 No file 'swakConfiguration' in the top directory of the swak-sources. Language integrations probably won't work '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakGeneralLanguageIntegration.so' is up to date. SWAK_PYTHON2_INCLUDE not defined .... no Python2-Integration. Most people are fine without it SWAK_PYTHON3_INCLUDE not defined .... no Python3-Integration. Most people are fine without it SWAK_LUA_LINK not defined .... no Lua-Integration. Most people are fine without it '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakScriptableLagrangian.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakChemistryModelFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakDynamicMeshFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakFvcSchemesFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakLagrangianCloudSourcesFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakLocalCalculationsFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakMeshQualityFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakMeshWaveFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakMRFFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakQuantileFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakRadiationModelFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakRandomFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakShiftFieldFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakSurfacesAndSetsFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakThermoTurbFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakTransportTurbFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakVelocityFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakFacSchemesFunctionPlugin.so' is up to date. '/home/mapache/foam/mapache-4.0/lib/linux64GccDPOpt/libswakCoalCloudAdaptor.so' is up to date. If you have your own function-plugins you can specify them using the SWAK_USER_PLUGINS environment variable and they would be compiled now. If you don't know what this means: don't bother. You propably don't need it SWAK_PYTHON2_INCLUDE not defined .... no Python-Integration. Utility funkyPythonPostproc not compiled make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/calcNonUniformOffsetsForMapped' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/fieldReport' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/funkyDoCalc' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/funkySetAreaFields' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/funkySetBoundaryField' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/funkySetLagrangianField' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/funkySetFields' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/funkyWarpMesh' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/replayTransientBC' está actualizado. make[1]: '/home/mapache/foam/mapache-4.0/applications/bin/linux64GccDPOpt/writeBoundarySubfields' está actualizado. If you want to use swakCoded-function object or compile software based on swak set the environment variable SWAK4FOAM_SRC to /home/mapache/foam/mapache-4.0/swak4Foam/Libraries (most people will be fine without setting that variable) |
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February 4, 2021, 04:23 |
Warning while decomposing
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#13 |
New Member
sujata
Join Date: Dec 2019
Posts: 10
Rep Power: 6 |
Dear All,
I am new to OpenFOAM. I run my simulations on HPC. The software is installed on the server. While decomposing it gives the following warning. FOAM Warning : From function bool Foam::dlLibraryTable:pen(const Foam::fileName &, bool) in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 97 could not load "myPhaseIncompressibleRASModels.so" Can anyone help me with what should I do? |
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March 28, 2022, 20:11 |
same problem
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#14 |
Senior Member
Farzad Faraji
Join Date: Nov 2019
Posts: 206
Rep Power: 7 |
Hello all
I had the same problem with libsimpleSwakFunctionObjects.so file, and I cannot find it in FOAM_USER_LIBBIN. I print out the errors during swak4Foam compilation and this is the reason; Code:
collect2: error: ld returned 1 exit status /opt/openfoam6/wmake/makefiles/general:167: recipe for target '/home/farzad/OpenFOAM/farzad-6/platforms/linux64GccDPInt32Opt/lib/libsimpleSwakFunctionObjects.so' failed make: *** [/home/farzad/OpenFOAM/farzad-6/platforms/linux64GccDPInt32Opt/lib/libsimpleSwakFunctionObjects.so] Error 1 wmake libso simpleRegionSolvers wmakeLnIncludeAll: running wmakeLnInclude on dependent libraries: Code:
chown -R $USER:$USER /home/ehsan/swak4Foam_2.x chown -R $USER:$USER /home/$USER/OpenFOAM/$USER-2.4.0 Thanks, Farzad |
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April 27, 2022, 20:10 |
I am having similiar issue
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#15 |
New Member
Olabode Ajenifujah
Join Date: Apr 2022
Posts: 15
Rep Power: 4 |
(base) cmu-mail@cmu-mail:~/OpenFOAM/install_swak$ sudo chown -R $USER:$USER /home/cmu-mail/OpenFOAM/install_swak/$USER-4.0
chown: cannot access '/home/cmu-mail/OpenFOAM/install_swak/cmu-mail-4.0': No such file or directory (base) cmu-mail@cmu-mail:~/OpenFOAM/install_swak$ sudo chown -R $USER:$USER /home/cmu-mail/OpenFOAM/install_swak/swak4Foam_4.X chown: cannot access '/home/cmu-mail/OpenFOAM/install_swak/swak4Foam_4.X': No such file or directory (base) cmu-mail@cmu-mail:~/OpenFOAM/install_swak$ |
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April 7, 2024, 12:35 |
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#16 | |
Senior Member
Guilherme
Join Date: Apr 2017
Posts: 232
Rep Power: 10 |
Quote:
Did you manage to resolve your problem? I have the same one in OpenFOAM 11. |
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