AMI interDyMFoam for mixer nu problem

danny123 · June 19, 2013, 05:23

Hello,

I have altered the mixerAMI tutorial case to have an interface between 2 phases. The calculation seems starting off ok, and build the 1st time folder (0.1 s) result out of 5 s. Then the program abborts having the following error message:

HTML Code:

dw@PC83U:~/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2$ mpirun -np 6 interDyMFoam -parallel > log &
[1] 3945
dw@PC83U:~/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2$ [1] 
[1] 
[1] --> FOAM FATAL IO ERROR: 
[1] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor1/constant/transportProperties"
[1] 
[1] file: [2] 
[2] 
[2] --> FOAM FATAL IO ERROR: 
[2] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor2/constant/transportProperties"
[2] 
[2] file: /home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor2/constant/transportProperties from line 0 to line 0[4] [5] 
[5] 
[5] --> FOAM FATAL IO ERROR: 
[5] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor5/constant/transportProperties"
[5] 
[5] file: /home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor5/constant/transportProperties from line 0 to line 0.
[5] 
[5]     From function dictionary::lookupEntry(const word&, bool, bool) const/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor1/constant/transportProperties from line 0 to line 0.
[1] 
[1]     From function dictionary::lookupEntry(const word&, bool, bool) const
[1]     in file db/dictionary/dictionary.C at line 400.
[1] 
FOAM parallel run exiting
[1] 
.
[2] 
[2]     From function dictionary::lookupEntry(const word&, bool, bool) const
[2]     in file db/dictionary/dictionary.C at line 400.
[2] 
FOAM parallel run exiting
[2] 
--------------------------------------------------------------------------
MPI_ABORT was invoked on rank 5 in communicator MPI_COMM_WORLD 
with errorcode 1.

NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
You may or may not see output from other processes, depending on
exactly when Open MPI kills them.
--------------------------------------------------------------------------

[5]     in file db/dictionary/dictionary.C at line 400.
[5] 
FOAM parallel run exiting
[5] 
[0] 
[0] 
[0] --> FOAM FATAL IO ERROR: 
[0] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor0/constant/transportProperties"
[0] 
[0] file: /home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor0/constant/transportProperties from line 20 to line 43.
[0] 
[0]     From function dictionary::lookupEntry(const word&, bool, bool) const
[0]     in file db/dictionary/dictionary.C at line 400.
[0] 
FOAM parallel run exiting
[0] 
[3] 
[3] 
[3] --> FOAM FATAL IO ERROR: 
[3] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor3/constant/transportProperties"
[3] 
[3] file: /home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor3/constant/transportProperties from line 0 to line 0.
[3] 
[3]     From function dictionary::lookupEntry(const word&, bool, bool) const
[3]     in file db/dictionary/dictionary.C at line 400.
[3] 
FOAM parallel run exiting
[3] 

[4] 
[4] --> FOAM FATAL IO ERROR: 
[4] keyword nu is undefined in dictionary "/home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor4/constant/transportProperties"
[4] 
[4] file: /home/dw/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2/processor4/constant/transportProperties from line 0 to line 0.
[4] 
[4]     From function dictionary::lookupEntry(const word&, bool, bool) const
[4]     in file db/dictionary/dictionary.C at line 400.
[4] 
FOAM parallel run exiting
[4] 
--------------------------------------------------------------------------
mpirun has exited due to process rank 5 with PID 3951 on
node PC83U exiting improperly. There are two reasons this could occur:

1. this process did not call "init" before exiting, but others in
the job did. This can cause a job to hang indefinitely while it waits
for all processes to call "init". By rule, if one process calls "init",
then ALL processes must call "init" prior to termination.

2. this process called "init", but exited without calling "finalize".
By rule, all processes that call "init" MUST call "finalize" prior to
exiting or it will be considered an "abnormal termination"

This may have caused other processes in the application to be
terminated by signals sent by mpirun (as reported here).
--------------------------------------------------------------------------
[PC83U:03945] 5 more processes have sent help message help-mpi-api.txt / mpi-abort
[PC83U:03945] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages

[1]+  Exit 1                  mpirun -np 6 interDyMFoam -parallel > log
dw@PC83U:~/OpenFOAM/dw-2.1.x/run/MooneyMeter_AMI_interDymFoam_2$

The last iteration step looks like this:

HTML Code:

Interface Courant Number mean: 0 max: 0
Courant Number mean: 0.00718959 max: 0.0288944
deltaT = 0.00863822
Time = 0.1

solidBodyMotionFunctions::rotatingMotion::transformation(): Time = 0.1 transformation: ((0 0 0) (0.999945 (0 0 0.0104718)))
AMI: Creating addressing and weights between 3834 source faces and 3834 target faces
AMI: Patch source weights min/max/average = 1, 1.00701, 1.00045
AMI: Patch target weights min/max/average = 1, 1.00435, 1.00039
Execution time for mesh.update() = 0.14 s
MULES: Solving for alpha1
Phase-1 volume fraction = 0.531065  Min(alpha1) = -2.5463e-34  Max(alpha1) = 1
MULES: Solving for alpha1
Phase-1 volume fraction = 0.531065  Min(alpha1) = -1.57193e-33  Max(alpha1) = 1
MULES: Solving for alpha1
Phase-1 volume fraction = 0.531065  Min(alpha1) = -1.57193e-33  Max(alpha1) = 1
PIMPLE: iteration 1
smoothSolver:  Solving for Ux, Initial residual = 0.000580287, Final residual = 7.26327e-06, No Iterations 7
smoothSolver:  Solving for Uy, Initial residual = 0.000580396, Final residual = 7.1926e-06, No Iterations 7
smoothSolver:  Solving for Uz, Initial residual = 0.0348143, Final residual = 6.43603e-06, No Iterations 17
GAMG:  Solving for p_rgh, Initial residual = 4.63679e-07, Final residual = 9.73762e-09, No Iterations 11
time step continuity errors : sum local = 6.73903e-08, global = 8.68606e-09, cumulative = 2.30308e-06
GAMG:  Solving for p_rgh, Initial residual = 2.225e-08, Final residual = 4.5959e-09, No Iterations 6
time step continuity errors : sum local = 1.80979e-07, global = 9.84622e-09, cumulative = 2.31293e-06
GAMG:  Solving for p_rgh, Initial residual = 2.65858e-08, Final residual = 7.77777e-09, No Iterations 1
time step continuity errors : sum local = 1.27862e-07, global = 9.97309e-09, cumulative = 2.3229e-06
GAMG:  Solving for p_rgh, Initial residual = 1.39376e-08, Final residual = 7.85448e-09, No Iterations 2
time step continuity errors : sum local = 1.23004e-07, global = 9.88666e-09, cumulative = 2.33279e-06
GAMG:  Solving for p_rgh, Initial residual = 1.6827e-08, Final residual = 2.94924e-09, No Iterations 1
time step continuity errors : sum local = 4.24369e-08, global = 9.88312e-09, cumulative = 2.34267e-06
GAMG:  Solving for p_rgh, Initial residual = 5.29784e-09, Final residual = 5.29784e-09, No Iterations 0
time step continuity errors : sum local = 7.37101e-08, global = 9.88904e-09, cumulative = 2.35256e-06
PIMPLE: iteration 2
smoothSolver:  Solving for Ux, Initial residual = 0.000406186, Final residual = 9.17091e-06, No Iterations 8
smoothSolver:  Solving for Uy, Initial residual = 0.000406245, Final residual = 9.11417e-06, No Iterations 8
smoothSolver:  Solving for Uz, Initial residual = 0.03295, Final residual = 7.27708e-06, No Iterations 17
GAMG:  Solving for p_rgh, Initial residual = 1.20815e-07, Final residual = 6.02623e-09, No Iterations 8
time step continuity errors : sum local = 1.17466e-07, global = 1.1788e-08, cumulative = 2.36435e-06
GAMG:  Solving for p_rgh, Initial residual = 4.85723e-08, Final residual = 9.21026e-09, No Iterations 6
time step continuity errors : sum local = 1.65825e-07, global = 1.0649e-08, cumulative = 2.375e-06
GAMG:  Solving for p_rgh, Initial residual = 1.4502e-07, Final residual = 8.6203e-09, No Iterations 7
time step continuity errors : sum local = 2.90993e-08, global = 1.05608e-08, cumulative = 2.38556e-06
GAMG:  Solving for p_rgh, Initial residual = 4.74253e-08, Final residual = 5.46874e-09, No Iterations 1
time step continuity errors : sum local = 2.40905e-08, global = 1.05746e-08, cumulative = 2.39613e-06
GAMG:  Solving for p_rgh, Initial residual = 1.16193e-08, Final residual = 4.55811e-09, No Iterations 2
time step continuity errors : sum local = 1.99323e-08, global = 1.05617e-08, cumulative = 2.40669e-06
GAMG:  Solving for p_rgh, Initial residual = 9.88582e-09, Final residual = 9.88582e-09, No Iterations 0
time step continuity errors : sum local = 4.26416e-08, global = 1.05606e-08, cumulative = 2.41726e-06
PIMPLE: iteration 3
smoothSolver:  Solving for Ux, Initial residual = 7.31042e-05, Final residual = 8.09888e-06, No Iterations 3
smoothSolver:  Solving for Uy, Initial residual = 7.3104e-05, Final residual = 8.05193e-06, No Iterations 3
smoothSolver:  Solving for Uz, Initial residual = 0.0126386, Final residual = 8.20881e-06, No Iterations 14
GAMG:  Solving for p_rgh, Initial residual = 7.15945e-08, Final residual = 7.47356e-09, No Iterations 1
time step continuity errors : sum local = 3.32439e-08, global = 1.059e-08, cumulative = 2.42785e-06
GAMG:  Solving for p_rgh, Initial residual = 1.86575e-08, Final residual = 4.7532e-09, No Iterations 1
time step continuity errors : sum local = 2.10096e-08, global = 1.0583e-08, cumulative = 2.43843e-06
GAMG:  Solving for p_rgh, Initial residual = 8.49776e-09, Final residual = 8.49776e-09, No Iterations 0
time step continuity errors : sum local = 3.53645e-08, global = 1.05813e-08, cumulative = 2.44901e-06
GAMG:  Solving for p_rgh, Initial residual = 1.04412e-08, Final residual = 3.86596e-09, No Iterations 1
time step continuity errors : sum local = 1.63832e-08, global = 1.05833e-08, cumulative = 2.45959e-06
GAMG:  Solving for p_rgh, Initial residual = 4.58133e-09, Final residual = 4.58133e-09, No Iterations 0
time step continuity errors : sum local = 1.87374e-08, global = 1.05827e-08, cumulative = 2.47018e-06
GAMG:  Solving for p_rgh, Initial residual = 5.12872e-09, Final residual = 5.12872e-09, No Iterations 0
time step continuity errors : sum local = 2.09763e-08, global = 1.05827e-08, cumulative = 2.48076e-06
PIMPLE: iteration 4
smoothSolver:  Solving for Ux, Initial residual = 3.00653e-05, Final residual = 7.61561e-06, No Iterations 2
smoothSolver:  Solving for Uy, Initial residual = 3.00715e-05, Final residual = 7.61024e-06, No Iterations 2
smoothSolver:  Solving for Uz, Initial residual = 0.00640266, Final residual = 8.44997e-06, No Iterations 13
GAMG:  Solving for p_rgh, Initial residual = 2.59555e-08, Final residual = 4.07093e-09, No Iterations 1
time step continuity errors : sum local = 1.67074e-08, global = 1.05998e-08, cumulative = 2.49136e-06
GAMG:  Solving for p_rgh, Initial residual = 8.68281e-09, Final residual = 8.68281e-09, No Iterations 0
time step continuity errors : sum local = 3.60341e-08, global = 1.06025e-08, cumulative = 2.50196e-06
GAMG:  Solving for p_rgh, Initial residual = 1.17972e-08, Final residual = 3.7096e-09, No Iterations 1
time step continuity errors : sum local = 1.5422e-08, global = 1.05886e-08, cumulative = 2.51255e-06
GAMG:  Solving for p_rgh, Initial residual = 5.39397e-09, Final residual = 5.39397e-09, No Iterations 0
time step continuity errors : sum local = 2.22894e-08, global = 1.05884e-08, cumulative = 2.52314e-06
GAMG:  Solving for p_rgh, Initial residual = 6.74929e-09, Final residual = 6.74929e-09, No Iterations 0
time step continuity errors : sum local = 2.789e-08, global = 1.05884e-08, cumulative = 2.53373e-06
GAMG:  Solving for p_rgh, Initial residual = 7.69072e-09, Final residual = 7.69072e-09, No Iterations 0
time step continuity errors : sum local = 3.17803e-08, global = 1.05884e-08, cumulative = 2.54431e-06
PIMPLE: iteration 5
smoothSolver:  Solving for Ux, Initial residual = 1.45307e-05, Final residual = 7.77353e-06, No Iterations 1
smoothSolver:  Solving for Uy, Initial residual = 1.4495e-05, Final residual = 7.72975e-06, No Iterations 1
smoothSolver:  Solving for Uz, Initial residual = 0.0039205, Final residual = 8.98137e-06, No Iterations 12
GAMG:  Solving for p_rgh, Initial residual = 1.855e-08, Final residual = 5.7775e-09, No Iterations 1
time step continuity errors : sum local = 2.3897e-08, global = 1.05728e-08, cumulative = 2.55489e-06
GAMG:  Solving for p_rgh, Initial residual = 1.00594e-08, Final residual = 3.79035e-09, No Iterations 1
time step continuity errors : sum local = 1.5562e-08, global = 1.05829e-08, cumulative = 2.56547e-06
GAMG:  Solving for p_rgh, Initial residual = 5.14613e-09, Final residual = 5.14613e-09, No Iterations 0
time step continuity errors : sum local = 2.10885e-08, global = 1.05838e-08, cumulative = 2.57605e-06
GAMG:  Solving for p_rgh, Initial residual = 6.09124e-09, Final residual = 6.09124e-09, No Iterations 0
time step continuity errors : sum local = 2.49615e-08, global = 1.05838e-08, cumulative = 2.58664e-06
GAMG:  Solving for p_rgh, Initial residual = 6.82151e-09, Final residual = 6.82151e-09, No Iterations 0
time step continuity errors : sum local = 2.79541e-08, global = 1.05838e-08, cumulative = 2.59722e-06
GAMG:  Solving for p_rgh, Initial residual = 7.36735e-09, Final residual = 7.36735e-09, No Iterations 0
time step continuity errors : sum local = 3.01909e-08, global = 1.05838e-08, cumulative = 2.60781e-06
PIMPLE: iteration 6
smoothSolver:  Solving for Ux, Initial residual = 8.0169e-06, Final residual = 9.08257e-07, No Iterations 4
smoothSolver:  Solving for Uy, Initial residual = 7.99963e-06, Final residual = 8.9875e-07, No Iterations 4
smoothSolver:  Solving for Uz, Initial residual = 0.00224408, Final residual = 8.402e-07, No Iterations 16
GAMG:  Solving for p_rgh, Initial residual = 1.59378e-08, Final residual = 4.26623e-09, No Iterations 1
time step continuity errors : sum local = 1.74918e-08, global = 1.0607e-08, cumulative = 2.61841e-06
GAMG:  Solving for p_rgh, Initial residual = 8.24514e-09, Final residual = 8.24514e-09, No Iterations 0
time step continuity errors : sum local = 3.42347e-08, global = 1.061e-08, cumulative = 2.62902e-06
GAMG:  Solving for p_rgh, Initial residual = 1.10524e-08, Final residual = 3.48832e-09, No Iterations 1
time step continuity errors : sum local = 1.44895e-08, global = 1.0589e-08, cumulative = 2.63961e-06
GAMG:  Solving for p_rgh, Initial residual = 5.03605e-09, Final residual = 5.03605e-09, No Iterations 0
time step continuity errors : sum local = 2.07288e-08, global = 1.05877e-08, cumulative = 2.6502e-06
GAMG:  Solving for p_rgh, Initial residual = 6.05585e-09, Final residual = 6.05585e-09, No Iterations 0
time step continuity errors : sum local = 2.49263e-08, global = 1.05877e-08, cumulative = 2.66079e-06
GAMGPCG:  Solving for p_rgh, Initial residual = 6.71681e-09, Final residual = 6.71681e-09, No Iterations 0
time step continuity errors : sum local = 2.76469e-08, global = 1.05877e-08, cumulative = 2.67137e-06
ExecutionTime = 26.87 s  ClockTime = 27 s

I am a little confused. 1st: there is no transport property file within processor0 to 5 folders. There is, of course, in the parent folder. This looks like this:

Code:

/*--------------------------------*- C++ -*----------------------------------*\
| =========                 |                                                 |
| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
|  \\    /   O peration     | Version:  2.1.x                                 |
|   \\  /    A nd           | Web:      www.OpenFOAM.com                      |
|    \\/     M anipulation  |                                                 |
\*---------------------------------------------------------------------------*/
FoamFile
{
    version     2.0;
    format      ascii;
    class       dictionary;
    location    "constant";
    object      transportProperties;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

phase1
{
transportModel  CrossPowerLaw;

nu              nu [ 0 2 -1 0 0 0 0 ] 1;

CrossPowerLawCoeffs
{
    nu0             nu0 [ 0 2 -1 0 0 0 0 ] 310.553906;
    nuInf           nuInf [ 0 2 -1 0 0 0 0 ] 0;
    m               m [ 0 0 1 0 0 0 0 ] 2.26191333;
    n               n [ 0 0 0 0 0 0 0 ] 0.33808236;
}

rho             rho [ 1 -3 0 0 0 0 0 ] 803.792583;

}

phase2
{
    transportModel  Newtonian;
    nu              nu [ 0 2 -1 0 0 0 0 ] 1e-5;
    rho             rho [ 1 -3 0 0 0 0 0 ] 1;
}

sigma           sigma [ 1 0 -2 0 0 0 0 ] 0.05;


// ************************************************************************* //

One hint: the folder "forces" is empty, no data written except the header. This is, where it hangs?

Thanks for the help.

Regards,

Daniel

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