|
[Sponsors] |
February 18, 2015, 07:36 |
Error running simpleFoam in parallel
|
#1 |
Member
Rubén
Join Date: Oct 2014
Location: Munich
Posts: 47
Rep Power: 11 |
Hi FOAMers!
I have recently posted one theard, but I have had another issue and I would like to know if you can help me. I have searched in the forums but I don't have found anything about this error. I have done decomposePar in order to do my snappy, and after then I write mpirun -np 8 simpleFoam -parallel in order to run simpleFoam in parallel but I receive this error. Can you help me to find the reason? Thank you very much indeed in advance! Code:
usuario@usuario-SATELLITE-P50-A-14G:~/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon$ mpirun -np 8 simpleFoam -parallel /*---------------------------------------------------------------------------*\ | ========= | | | \\ / F ield | OpenFOAM: The Open Source CFD Toolbox | | \\ / O peration | Version: 2.3.0 | | \\ / A nd | Web: www.OpenFOAM.org | | \\/ M anipulation | | \*---------------------------------------------------------------------------*/ Build : 2.3.0-f5222ca19ce6 Exec : simpleFoam -parallel Date : Feb 18 2015 Time : 13:25:03 Host : "usuario-SATELLITE-P50-A-14G" PID : 7464 Case : /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon nProcs : 8 Slaves : 7 ( "usuario-SATELLITE-P50-A-14G.7465" "usuario-SATELLITE-P50-A-14G.7466" "usuario-SATELLITE-P50-A-14G.7467" "usuario-SATELLITE-P50-A-14G.7468" "usuario-SATELLITE-P50-A-14G.7469" "usuario-SATELLITE-P50-A-14G.7470" "usuario-SATELLITE-P50-A-14G.7471" ) Pstream initialized with: floatTransfer : 0 nProcsSimpleSum : 0 commsType : nonBlocking polling iterations : 0 sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE). fileModificationChecking : Monitoring run-time modified files using timeStampMaster allowSystemOperations : Disallowing user-supplied system call operations // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // Create time Create mesh for time = 0 Reading field p [4] [4] [4] --> FOAM FATAL IO ERROR: [4] Cannot find patchField entry for procBoundary4to5 [4] [4] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor4/0/p.boundaryField from line 28 to line 21. [4] [4] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [4] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [4] FOAM parallel run exiting [4] [5] [5] [6] [6] [6] --> FOAM FATAL IO ERROR: [6] Cannot find patchField entry for procBoundary6to5 [6] [6] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor6/0/p.boundaryField from line 28 to line 21. [6] [7] [7] [7] --> FOAM FATAL IO ERROR: [7] Cannot find patchField entry for procBoundary7to4 [7] [7] file: [6] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [6] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [6] FOAM parallel run exiting [6] [1] [1] [1] --> FOAM FATAL IO ERROR: [1] Cannot find patchField entry for procBoundary1to0 [1] [1] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor1/0/p.boundaryField from line 28 to line 21. [1] [1] From function /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor7/0/p.boundaryField from line 28 to line 21. [7] [7] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [7] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [7] FOAM parallel run exiting [7] [0] [0] [0] --> FOAM FATAL IO ERROR: [0] Cannot find patchField entry for procBoundary0to2 [0] [0] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor0/0/p.boundaryField from line 28 to line 21. [0] [0] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [0] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [0] FOAM parallel run exiting [0] GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [1] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [1] FOAM parallel run exiting [1] [2] [2] [2] --> FOAM FATAL IO ERROR: [2] Cannot find patchField entry for procBoundary2to0 [2] [2] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor2/0/p.boundaryField from line 28 to line 21. [2] [2] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [2] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [2] FOAM parallel run exiting [2] [3] [3] [3] --> FOAM FATAL IO ERROR: [3] Cannot find patchField entry for procBoundary3to0 [3] [3] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor3/0/p.boundaryField from line 28 to line 21. [3] [3] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [3] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [3] FOAM parallel run exiting [3] [5] --> FOAM FATAL IO ERROR: [5] Cannot find patchField entry for procBoundary5to4 [5] [5] file: /home/usuario/OpenFOAM/usuario-2.3.0/run/Frisbee_KEpsilon/processor5/0/p.boundaryField from line 28 to line 21. [5] [5] From function GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::readField(const DimensionedField<Type, GeoMesh>&, const dictionary&) [5] in file /home/usuario/OpenFOAM/OpenFOAM-2.3.0/src/OpenFOAM/lnInclude/GeometricBoundaryField.C at line 209. [5] FOAM parallel run exiting [5] -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 6 in communicator MPI_COMM_WORLD with errorcode 1. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun has exited due to process rank 5 with PID 7469 on node usuario-SATELLITE-P50-A-14G exiting improperly. There are two reasons this could occur: 1. this process did not call "init" before exiting, but others in the job did. This can cause a job to hang indefinitely while it waits for all processes to call "init". By rule, if one process calls "init", then ALL processes must call "init" prior to termination. 2. this process called "init", but exited without calling "finalize". By rule, all processes that call "init" MUST call "finalize" prior to exiting or it will be considered an "abnormal termination" This may have caused other processes in the application to be terminated by signals sent by mpirun (as reported here). -------------------------------------------------------------------------- [usuario-SATELLITE-P50-A-14G:07463] 7 more processes have sent help message help-mpi-api.txt / mpi-abort [usuario-SATELLITE-P50-A-14G:07463] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages |
|
|
|
Similar Threads | ||||
Thread | Thread Starter | Forum | Replies | Last Post |
simpleFoam parallel | AndrewMortimer | OpenFOAM Running, Solving & CFD | 12 | August 7, 2015 18:45 |
simpleFoam parallel solver & Fluent polyhedral mesh | Zlatko | OpenFOAM Running, Solving & CFD | 3 | September 26, 2014 06:53 |
simpleFoam in parallel issue | plucas | OpenFOAM Running, Solving & CFD | 3 | July 17, 2013 11:30 |
parallel Grief: BoundaryFields ok in single CPU but NOT in Parallel | JR22 | OpenFOAM Running, Solving & CFD | 2 | April 19, 2013 16:49 |
parallel simpleFoam freezes the whole system | vangelis | OpenFOAM Running, Solving & CFD | 14 | May 16, 2012 05:12 |