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July 23, 2014, 02:25 |
foam-extend_3.1 decompose and pyfoam warning
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#1 |
Senior Member
Baris (Heewa)
Join Date: Jan 2013
Location: Japan
Posts: 130
Rep Power: 13 |
Hi to everybody,
I am using foam-extend 3.1 and ubuntu version 12.04. After installation 3.1, when i tried to decompose my case although it gives following warning it makes decomposition: HTML Code:
Create mesh for region region0 Calculating distribution of cells --> FOAM Warning : From function dlLibraryTable::open(const fileName& functionLibName) in file db/dlLibraryTable/dlLibraryTable.C at line 85 could not load libmetisDecomp.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function decompositionMethod::loadExternalLibraries() in file decompositionMethod/decompositionMethod.C at line 453 Loading of decomposition library libmetisDecomp.so unsuccesful. Some decomposition methods may not be available --> FOAM Warning : From function dlLibraryTable::open(const fileName& functionLibName) in file db/dlLibraryTable/dlLibraryTable.C at line 85 could not load libparMetisDecomp.so: cannot open shared object file: No such file or directory --> FOAM Warning : From function decompositionMethod::loadExternalLibraries() in file decompositionMethod/decompositionMethod.C at line 453 Loading of decomposition library libparMetisDecomp.so unsuccesful. Some decomposition methods may not be available Selecting decompositionMethod simple Finished decomposition in 0.25 s Calculating original mesh data Distributing cells to processors Distributing faces to processors Calculating processor boundary addressing Distributing points to processors Constructing processor meshes Processor 0 Number of cells = 11668 Number of faces shared with processor 1 = 11850 Number of faces shared with processor 4 = 104 Number of processor patches = 2 Number of processor faces = 11954 Number of boundary faces = 11898 Processor 1 Number of cells = 20171 Number of faces shared with processor 0 = 11850 Number of faces shared with processor 2 = 1605 Number of faces shared with processor 5 = 296 Number of processor patches = 3 Number of processor faces = 13751 Number of boundary faces = 2282 Processor 2 Number of cells = 16737 Number of faces shared with processor 1 = 1605 Number of faces shared with processor 3 = 1190 Number of faces shared with processor 6 = 263 Number of faces shared with processor 5 = 22 Number of faces shared with processor 7 = 6 Number of processor patches = 5 Number of processor faces = 3086 Number of boundary faces = 6942 Processor 3 Number of cells = 16510 Number of faces shared with processor 2 = 1190 Number of faces shared with processor 7 = 348 Number of processor patches = 2 Number of processor faces = 1538 Number of boundary faces = 6888 Processor 4 Number of cells = 13049 Number of faces shared with processor 5 = 11874 Number of faces shared with processor 0 = 104 Number of faces shared with processor 8 = 155 Number of processor patches = 3 Number of processor faces = 12133 Number of boundary faces = 12051 Processor 5 Number of cells = 19115 Number of faces shared with processor 4 = 11874 Number of faces shared with processor 1 = 296 Number of faces shared with processor 6 = 1559 Number of faces shared with processor 2 = 22 Number of faces shared with processor 9 = 232 Number of faces shared with processor 8 = 50 Number of processor patches = 6 Number of processor faces = 14033 Number of boundary faces = 2193 Processor 6 Number of cells = 16566 Number of faces shared with processor 5 = 1559 Number of faces shared with processor 2 = 263 Number of faces shared with processor 7 = 1157 Number of faces shared with processor 10 = 242 Number of faces shared with processor 9 = 1 Number of faces shared with processor 11 = 3 Number of processor patches = 6 Number of processor faces = 3225 Number of boundary faces = 6844 Processor 7 Number of cells = 16356 Number of faces shared with processor 3 = 348 Number of faces shared with processor 6 = 1157 Number of faces shared with processor 2 = 6 Number of faces shared with processor 11 = 320 Number of processor patches = 4 Number of processor faces = 1831 Number of boundary faces = 6795 Processor 8 Number of cells = 24098 Number of faces shared with processor 4 = 155 Number of faces shared with processor 9 = 10882 Number of faces shared with processor 5 = 50 Number of faces shared with processor 10 = 102 Number of processor patches = 4 Number of processor faces = 11189 Number of boundary faces = 13084 Processor 9 Number of cells = 9528 Number of faces shared with processor 8 = 10882 Number of faces shared with processor 5 = 232 Number of faces shared with processor 10 = 1626 Number of faces shared with processor 6 = 1 Number of processor patches = 4 Number of processor faces = 12741 Number of boundary faces = 1943 Processor 10 Number of cells = 15511 Number of faces shared with processor 6 = 242 Number of faces shared with processor 9 = 1626 Number of faces shared with processor 11 = 1318 Number of faces shared with processor 8 = 102 Number of processor patches = 4 Number of processor faces = 3288 Number of boundary faces = 6414 Processor 11 Number of cells = 15948 Number of faces shared with processor 7 = 320 Number of faces shared with processor 10 = 1318 Number of faces shared with processor 6 = 3 Number of processor patches = 3 Number of processor faces = 1641 Number of boundary faces = 6795 Number of processor faces = 45205 Max number of processor patches = 6 Max number of faces between processors = 14033 Processor 0: field transfer Processor 1: field transfer Processor 2: field transfer Processor 3: field transfer Processor 4: field transfer Processor 5: field transfer Processor 6: field transfer Processor 7: field transfer Processor 8: field transfer Processor 9: field transfer Processor 10: field transfer Processor 11: field transfer End. HTML Code:
Executing /home/baris/foam/foam-extend-3.1/bin/foamInstallationTest: Checking basic setup... ------------------------------------------------------------------------------- Shell: bash Host: baris-desktop OS: Linux version 3.2.0-29-generic ------------------------------------------------------------------------------- Checking main foam-extend env variables... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Crit ------------------------------------------------------------------------------- $WM_PROJECT_INST_DIR /home/baris/foam yes yes $WM_PROJECT_USER_DIR /home/baris/foam/baris-3.1 no no $WM_THIRD_PARTY_DIR ...aris/foam/foam-extend-3.1/ThirdParty yes yes ------------------------------------------------------------------------------- Checking the foam-extend env variables set on the PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $WM_PROJECT_DIR /home/baris/foam/foam-extend-3.1 yes yes yes $FOAM_APPBIN ...3.1/applications/bin/linux64GccDPOpt yes yes yes $FOAM_SITE_APPBIN ...is/foam/site/3.1/bin/linux64GccDPOpt yes yes no $FOAM_USER_APPBIN ...3.1/applications/bin/linux64GccDPOpt no no $WM_DIR /home/baris/foam/foam-extend-3.1/wmake yes yes yes ------------------------------------------------------------------------------- Checking the foam-extend env variables set on the LD_LIBRARY_PATH... ------------------------------------------------------------------------------- Environment_variable Set_to_file_or_directory Valid Path Crit ------------------------------------------------------------------------------- $FOAM_LIBBIN .../foam-extend-3.1/lib/linux64GccDPOpt yes yes yes $FOAM_SITE_LIBBIN ...is/foam/site/3.1/lib/linux64GccDPOpt yes yes no $FOAM_USER_LIBBIN ...s/foam/baris-3.1/lib/linux64GccDPOpt no no $MPI_ARCH_PATH ...nmpi-1.6.5/platforms/linux64GccDPOpt yes yes yes ------------------------------------------------------------------------------- Third party software ------------------------------------------------------------------------------- Software Version Location ------------------------------------------------------------------------------- WARNING: gcc version does not match gcc supplied with this release of foam-extend Supplied version: 4.3.3 User version : 4.6.3 Minimum required: 4.3.1 gcc 4.6.3 WARNING: Conflicting installations: foam-extend settings : /bin/gcc current path : /usr/bin/gcc CRITICAL ERROR gzip 1.4 /bin/gzip tar 1.26 /bin/tar icoFoam ...am-extend-3.1/applications/bin/linux64GccDPOpt/icoFoam ------------------------------------------------------------------------------- Summary ------------------------------------------------------------------------------- Base configuration ok. The foam installation contains 1 critical error(s). Review the output for warning messages and consult the installation guide for trouble shooting. done. On the other hand, when i also tried to run parallel by using pyfoam it gives attached warning, but it is going to run. I am a bit confused about it. So, also about this if someone have idea i will be appreciated. thanks a lot. B |
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July 23, 2014, 16:44 |
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#2 | |
Assistant Moderator
Bernhard Gschaider
Join Date: Mar 2009
Posts: 4,225
Rep Power: 51 |
Quote:
Code:
Loading of decomposition library libmetisDecomp.so unsuccesful. Some decomposition methods may not be available
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July 24, 2014, 03:28 |
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#3 |
Senior Member
Baris (Heewa)
Join Date: Jan 2013
Location: Japan
Posts: 130
Rep Power: 13 |
Hi Bernhard,
Thank you for the information. Could you also tell me how can i correctly compile the metis and parMetis from the ThirdParty-directory. Also, do you have any idea about my 2nd (after runing the foamIstallation and it gives error) and 3rd (pyfoam warning) problems? Thanks in advance. Baris |
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July 24, 2014, 08:14 |
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#4 | ||
Assistant Moderator
Bernhard Gschaider
Join Date: Mar 2009
Posts: 4,225
Rep Power: 51 |
Quote:
a) I have no information whatsoever about your system b) most probably somebody else already had the problem. Search the Board c) my time is limited and I currently focus on swak4foam and pyFoam because I think there are few people here on the board with my expertise on these two. Installation-issues there are more people Quote:
Third question: please don't post screenshots of terminal output. It is hard to read and it is not searchable. From the blury pixels it looks like it is only a warning. Basically it found a string, tried to interpret it as a number and fails. Instead of failing it just informed you. To get to the heart of the matter I'd have to type it from your screenshot, hope that I didn't misstype it and try on my machine. Which I refuse to do. See c) above (first 4 words)
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