CFD Online Logo CFD Online URL
www.cfd-online.com
[Sponsors]
Home > Forums > Software User Forums > SU2 > SU2 Installation

Error building version 5.0.0 on cluster

Register Blogs Community New Posts Updated Threads Search

Like Tree1Likes
  • 1 Post By talbring

Reply
 
LinkBack Thread Tools Search this Thread Display Modes
Old   March 27, 2017, 05:38
Default Error building version 5.0.0 on cluster
  #1
Senior Member
 
Tom Fahner
Join Date: Mar 2009
Location: Breda, Netherlands
Posts: 634
Rep Power: 32
tomf will become famous soon enoughtomf will become famous soon enough
Send a message via MSN to tomf Send a message via Skype™ to tomf
Hi all,

For some reason SU2 will not compile on our cluster, with some issue with metis, which seems weird since it came with SU2, but maybe I am overlooking something? Previously we had version 4.2.0 running on the same cluster, all I did was git pull, configure and tried make, which failed with the error output below:

Code:
/usr/bin/ld: gk_cur_jbufs: TLS reference in ../../externals/metis/libmetis.a(libmetis_a-kmetis.o) mismatches non-TLS definition in ../../externals/metis/libmetis.a(libmetis_a-error.o) section .data
../../externals/metis/libmetis.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[1]: *** [../bin/SU2_CFD] Error 1
make: *** [all-recursive] Error 1
I hope someone can give a hint what went wrong?

Regards,
Tom
tomf is offline   Reply With Quote

Old   March 31, 2017, 11:46
Default
  #2
Super Moderator
 
Tim Albring
Join Date: Sep 2015
Posts: 195
Rep Power: 10
talbring is on a distinguished road
Hi Tom,
have a look here: https://web.archive.org/web/20150319...?part=1&chap=3

you can try adding the flag using: export CXXFLAGS="$CXXFLAGS -fPIC" before running the configure script.
tomf likes this.
talbring is offline   Reply With Quote

Old   April 2, 2017, 11:56
Default
  #3
Senior Member
 
Tom Fahner
Join Date: Mar 2009
Location: Breda, Netherlands
Posts: 634
Rep Power: 32
tomf will become famous soon enoughtomf will become famous soon enough
Send a message via MSN to tomf Send a message via Skype™ to tomf
Hi,

First it did not work, but I just had to make clean and run make again, and now it works!

Thanks a lot.

Best regards,
Tom

Last edited by tomf; April 2, 2017 at 12:03. Reason: Spoke too soon
tomf is offline   Reply With Quote

Reply


Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are Off
Pingbacks are On
Refbacks are On


Similar Threads
Thread Thread Starter Forum Replies Last Post
OpenFOAM on cluster: version GLIBCXX_3.4.9 and GLIBCXX_3.4.11 not found ovie OpenFOAM 10 April 19, 2021 18:06
simpleFoam convergence issue Harnoor OpenFOAM Running, Solving & CFD 13 November 16, 2016 08:23
[OpenFOAM.org] openfoam-2.2.0 installation on cluster of Redhat 4.1.2-48 Chandler OpenFOAM Installation 32 June 10, 2015 12:53
How can i uninstall new version of OF shipman OpenFOAM Installation 5 August 12, 2013 04:01
version GLIBCXX_3.4.9 and GLIBCXX_3.4.11 not found ovie Main CFD Forum 1 April 19, 2010 14:00


All times are GMT -4. The time now is 20:10.