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Make Error AD Build

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Old   February 28, 2019, 13:34
Default Make Error AD Build
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Amir Bagheri
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Hi All,

It seems that the AD build fails with OpenMPI 4.0.0. I don't really know where the source of error is, but I suspect it's with CGNS and how it's handled by OpenMPI?

The error is as follows:

In file included from ../../../Common/lib/../src/../include/./mpi_structure.hpp:42:0,
from ../../../Common/lib/../src/../include/geometry_structure.hpp:41,
from ../../../Common/lib/../src/fem_cgns_elements.cpp:34:
/usr/local/include/mpi.h:2633:20: note: declared here
OMPI_DECLSPEC int MPI_Keyval_free(int *keyval)
^~~~~~~~~~~~~~~
Makefile:1504: recipe for target '../src/libSU2_AD_a-fem_cgns_elements.o' failed
make[2]: *** [../src/libSU2_AD_a-fem_cgns_elements.o] Error 1
make[2]: Leaving directory '/home/akb1r19/CFD_Solvers/SU2/SU2-6.2.0/SU2_AD/Common/lib'
Makefile:441: recipe for target 'install-recursive' failed
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory '/home/akb1r19/CFD_Solvers/SU2/SU2-6.2.0/SU2_AD'
Makefile:13: recipe for target 'install-SU2_AD' failed
make: *** [install-SU2_AD] Error 2

My pregonfigure command is:

export CXXFLAGS="-O3" && sudo ./preconfigure.py --enable-autodiff --prefix=/home/akb1r19/CFD_Solvers/SU2/Instldir --enable-mpi --with-cc=/usr/local/bin/mpicc --with-cxx=/usr/local/bin/mpicxx &>preconfig.out

Attaching the whole make output, and the preconfigure log files here too.
I have successfully been able to compile with AD on a cluster with Intel MPI (2017.4.239). I run the exact same commands and it compiles without issue. I haven't tried mpich yet to see if the error persists. Any thoughts?

Thanks,
Amir
Attached Files
File Type: txt make.out.txt (49.3 KB, 1 views)
File Type: txt conf_SU2_BASE.log.txt (8.1 KB, 0 views)
File Type: txt config.log.base.txt (31.8 KB, 0 views)
File Type: txt conf_SU2_AD.log.txt (8.3 KB, 1 views)
File Type: txt config.log.ad.txt (32.3 KB, 2 views)

Last edited by Amirkb; March 4, 2019 at 09:55. Reason: Making question more concise and easier to understand.
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Old   March 4, 2019, 15:29
Default SImilar Problem
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EamonnC
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I have a similar problem, would be a great help if anyone could help here.
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Old   March 4, 2019, 19:23
Default hdf5?
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Amir Bagheri
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It has occurred to me that perhaps I need to compile hdf5 on my system for the parallel integration of CGNS with OpenMPI?

I'm going to try it tomorrow and report back.

Amir
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Old   March 5, 2019, 13:46
Smile Problem Solved
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Amir Bagheri
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Hi all,

For those who are facing the same problem, I tried with OpenMPI 3.0.3 instead of 4.0.0 and the AD build was succesful.

Please refer to issue #659 on SU2's GitHub repository for more info.

https://github.com/su2code/SU2/issues/659

Amir
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