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Parallelizing SU2 in PBS

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Old   July 29, 2019, 09:06
Post Parallelizing SU2 in PBS
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Nadeem Kever
Join Date: Jul 2019
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Hi,

I am trying to run the shape_optimization.py script and use all my available nodes in PBS and I don't think I am doing this right.

Here is my script:

Code:
#PBS -q devel

##PBS -q long

##PBS -q normal

#PBS -W group_list=a1489

#PBS -lselect=50:ncpus=28:model=bro,walltime=02:00:00

##PBS -lselect=80:ncpus=28:model=bro,walltime=08:00:00

##PBS -lselect=80:ncpus=28:model=bro,walltime=50:00:00

#PBS -N test_su2

#

# Request that regular output and terminal output go to the same file

#PBS -j oe

#PBS -m n

# go to where the qsub was performed.

cd $PBS_O_WORKDIR

# Running Program

export SU2_RUN="/home6/nkever/su2/install/SU2/bin"

export SU2_HOME="/home6/nkever/su2/src/SU2"

export PATH=$PATH:$SU2_RUN

export PYTHONPATH=$PYTHONPATH:$SU2_RUN

module load mpi-sgi/mpt

module load python/2.7.15

module load comp-intel/2018.0.128

./shape_optimization.py -g CONTINUOUS_ADJOINT -o SLSQP -f inv_NACA0012_basic.cfg -n 400

echo "finished mpirun"

So I think the issue may be the -n, my interpretation is that the number of partitions tells su2 the amount of nodes. How do I use all my nodes?

I've seen this thread already, but I'm not sure it addresses my question. Thank you!
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