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[ImmersedBoundary] ParaFoam crashes ONLY for immersed boundary solver

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Old   December 17, 2018, 11:35
Default ParaFoam crashes ONLY for immersed boundary solver
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Emre
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Hello foam users,

I have a working foam-extend-4.0 case which had proved itself on my laptop before I formatted it. The case basically consists of 2D snappyHexMesh + icoDyMIbFoam solver.

Now I can run those simulation without any hassle as I did before. ParaFoam works but can't show time steps. When I click PLAY button, ParaView crashes with code below:

Code:
emre@toshiba:~/foam/foam-extend-4.0/tutorials/immersedBoundary/movingCylinderInChannelIco$ paraFoam 
created temporary 'movingCylinderInChannelIco.OpenFOAM'
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/liblduSolvers.so: undefined symbol: _ZTIN4Foam5token8compoundE
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/libdynamicMesh.so: undefined symbol: _ZTIN4Foam5token8compoundE
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/libdynamicMesh.so: undefined symbol: _ZTIN4Foam5token8compoundE

--> FOAM FATAL IO ERROR: 

    size of field refValue (96) is not the same size as the patch (0)
    on patch ibCylinder of field U in file "/home/emre/foam/foam-extend-4.0/tutorials/immersedBoundary/movingCylinderInChannelIco/0.2/U"

file: /home/emre/foam/foam-extend-4.0/tutorials/immersedBoundary/movingCylinderInChannelIco/0.2/U::boundaryField::ibCylinder from line 1905 to line 2011.

    From function genericFvPatchField<Type>::genericFvPatchField(const fvPatch&, const Field<Type>&, const dictionary&)
I'm considering to rebuild AllMakeStage4. Is there something I can do to view all time steps without crashing?

Beside that I tested my foam-extend-4.0 configuration by trying to run tutorials. I can run simpleFoam, icoFoam etc. I realized that only icoDyMIbFOam and immersed boundary methods crash. It is weird.

Regards,

Emre
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Old   December 18, 2018, 09:59
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Emre
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Hello,

I have similar problem which I have already posted here: [Moderator note: moved the two posts to the same thread.]

ParaFoam opens with these warnings:
Code:
emre@toshiba:~/FOAM_RUN/2dPlateT055_300$ paraFoam 
created temporary '2dPlateT055_300.OpenFOAM'
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/libdynamicMesh.so: undefined symbol: _ZTIN4Foam5token8compoundE
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/libdynamicMesh.so: undefined symbol: _ZTIN4Foam5token8compoundE
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/libdynamicMesh.so: undefined symbol: _ZTIN4Foam5token8compoundE
--> FOAM Warning : 
    From function dlLibraryTable::open(const fileName& functionLibName)
    in file db/dlLibraryTable/dlLibraryTable.C at line 124
    could not load /home/emre/foam/foam-extend-4.0/lib/linux64GccDPOpt/liblduSolvers.so: undefined symbol: _ZTIN4Foam5token8compoundE
I thought it's a ParaView error. Thus, I tried to re-install it with these commands:
Quote:
./AllClean.stage4
./AllMake.stage4
But it didn't solve the problem. Then I focused that part:
Code:
libdynamicMesh.so: undefined symbol: _ZTIN4Foam5token8compoundE
I checked source file but changing .OpenFoam to .foam seems had already been done in the code. Because I use foam-extend-4.0 on Ubuntu 18.04.1 LTS.

Is there any idea to solve this issue?


EDIT: I can run time steps of my simulation with latest ParaView 5.4.1. It can open the file with .OpenFOAM extension. However I need to create an .OpenFOAM file by typing old paraFoam (problematic).


Best regards,

Emre

Last edited by wyldckat; December 19, 2018 at 18:33. Reason: "EDIT:" by original forum member | moderator node added by moderator
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Old   December 19, 2018, 18:39
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Bruno Santos
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Quick answer:
  1. Run the command foamToVTK
  2. Run the command paraview
  3. From within ParaView, open the group file "VTK/movingCylinderInChannelIco_..vtk"
  4. The group file "VTK/ibCylinder_..stl" has a different time scale, so it might be harder to see it when the other group is open
This is because the internal reader ".foam" is broken for this feature and I don't know the status of the ".OpenFOAM" reader that foam-extend 4.0 provides.
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foam extend 4.0, parafoam, paraview, ubuntu 18.04

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