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Old   June 15, 2021, 05:10
Default swak4foam on CentOS7 cluster
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Dmitry
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Location: Moscow, RU
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Hello, everyone!
I am trying to install swak4foam on a cluster with this configuration:

centos-release-7-6.1810.2.el7.centos.x86_64
flex 2.5.37
cmake version 2.8.12.2
bison (GNU Bison) 3.0.4
gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-36)
Intel(R) MPI Library for Linux* OS, Version 2021.1 Build 20201112 (id: b9c9d2fc5)
Copyright 2003-2020, Intel Corporation.
icc (ICC) 2021.1 Beta 20201112

I successfully installed OpenFOAM7, but I am having problems with swak..

My steps are:
1) download source files on my local machine: hg clone http://hg.code.sf.net/p/openfoam-extend/swak4Foam openfoam-extend-swak4Foam
2) copy source files to my $HOME directory on the cluster
3) load modules for compilation:
module purge
module load compilers/intel/2021.1.1
module load mpi/intel/2021.1.1
module load launcher/suppz
4) set the environment variables:
source $HOME/OpenFOAM/OpenFOAM-7/etc/bashrc WM_MPLIB=INTELMPI FOAMY_HEX_MESH=yes MPI_ROOT=/opt/software/intel/oneapi/mpi/2021.1.1

export PATH=$HOME/openfoam-extend-swak4Foam/maintainanceScripts/privateRequirements/bin:$PATH

export SWAK4FOAM_SRC=$HOME/openfoam-extend-swak4Foam/Libraries
5) run ./AllwmakeAll -j >AllwmakeAll.txt &

There are no obvious errors in the log file (see attach), but there are also no files in ~/OpenFOAM/kuzovlev-7/platforms/linux64IccDPInt32Opt/bin/ , only libraries in
~/OpenFOAM/kuzovlev-7/platforms/linux64IccDPInt32Opt/lib/
Quote:
libgroovyBC.so
libgroovyStandardBCs.so
libsimpleCloudFunctionObjects.so
libsimpleFunctionObjects.so
libsimpleLagrangianFunctionObjects.so
libsimpleSearchableSurfaces.so
libsimpleSwakFunctionObjects.so
libswak4FoamParsers.so
libswakChemistryModelFunctionPlugin.so
libswakCloudFunctionObjects.so
libswakCoalCloudAdaptor.so
libswakDynamicMeshFunctionPlugin.so
libswakDynamicMesh.so
libswakFunctionObjects.so
libswakFvcSchemesFunctionPlugin.so
libswakFvOptions.so
libswakGeneralLanguageIntegration.so
libswakLagrangianCloudSourcesFunctionPlugin.so
libswakLagrangianParser.so
libswakLocalCalculationsFunctionPlugin.so
libswakMeshQualityFunctionPlugin.so
libswakMeshWaveFunctionPlugin.so
libswakMRFFunctionPlugin.so
libswakPython3Integration.so
libswakPythonIntegration.so
libswakQuantileFunctionPlugin.so
libswakRadiationModelFunctionPlugin.so
libswakRandomFunctionPlugin.so
libswakScriptableLagrangian.so
libswakShiftFieldFunctionPlugin.so
libswakSourceFields.so
libswakStateMachine.so
libswakSurfacesAndSetsFunctionPlugin.so
libswakThermoTurbFunctionPlugin.so
libswakTopoSources.so
libswakTransportTurbFunctionPlugin.so
libswakVelocityFunctionPlugin.so
What I am doing wrong?
Attached Files
File Type: zip AllwmakeAll.zip (22.5 KB, 2 views)
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Old   June 23, 2021, 13:56
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Dmitry
Join Date: Sep 2020
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solved this problem by changing in Allwmake file WM_COMPILER from Gcc to Icc :

Code:
(
  #revert back to the default Gcc compiler, due to some problems that Icc has
  #with overly complex classes
  [ "$WM_COMPILER" = "Icc" ] && export WM_COMPILER=Icc
  cd Utilities; $BEAR_COMPILE_PREFIX wmake all
)

Last edited by complete.basis; June 23, 2021 at 17:52.
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Old   January 17, 2023, 23:54
Default Swak4Foam installation
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VINIT
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Can someone please help. It's time sensitive.
I am trying to get Swak4Foam installed on Cluster. OpenFOAM v2106 is successfully installed in Cluster but giving issues for swak4foam.

I installed it on my PC and it was installed. But I am using Ubuntu 22.04 and cluster has Ubuntu 16.04.

It is not able to find Flex although its already installed.
Here is the log:

Current OpenFOAM version is v2106.

Previously compiled for OpenFOAM (v2106)

Reading variables from 'swakConfiguration'

Looking for Python 2

Looking for Python 3

Found Python 3.7

Configuring Python 3.7

Using python3.7 at /usr/bin/python3.7-config for python3

Checking swak4Foam-version and generating file

Swak version is 202x.yy.0

hg info: a69d0c0cbe50 (feature/port/p2106) tip

Using /usr/bin/bear to build compilation database

Bison: /usr/bin/bison

Flex: /usr/bin/flex

Bison at /usr/bin/bison is version 3.3.2 (Major 3 Minor 3)

Flex is version 2.6.4 (Minor version: 4)

OpenFOAM-version: Major 2106 Minor 0 Patch 0 (-1 == x / 0) Fork: com

No change to swak4FoamParsers/foamVersion4swak.H


Please include the output above when reporting a problem in the compilation. It helps diagnosing the problem



wmake libso swak4FoamParsers

/apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/options:69: /apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/../myflex: No such file or directory

make: *** No rule to make target '/apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/../myflex'. Stop.

/apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/options:69: /apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/../myflex: No such file or directory

make: *** No rule to make target '/apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/../myflex'. Stop.

wmake error: file '/apps/cluster/OpenFOAM-v2106/build/linux64GccDPInt32Opt/swak4Foam/Libraries/swak4FoamParsers/sourceFiles' could not be created in /apps/cluster/OpenFOAM-v2106/swak4Foam/Libraries/swak4FoamParsers

Parser library did not compile OK. No sense continuing as everything else depends on it


Requirements for Library not satisfied. I see no sense in going on

Check the README before you go on to ask. And search: Most likely your problem occurred to 5 other people before and has been solved on the MessageBoard
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