Libso - error - openfoam 11

gu1 · April 7, 2024, 06:32

Hi,

I'm using OpenFOAM 11 on Ubuntu 22.04 LTS and I'm not able to use the solver I developed. I used it safely in version 9, I made the changes to compile it successfully in version 11 but unfortunately I'm getting the following error:

Code:

~/OpenFOAM/assis-11/run/DOC$ foamRun
/*---------------------------------------------------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     | Website:  https://openfoam.org
    \\  /    A nd           | Version:  11
     \\/     M anipulation  |
\*---------------------------------------------------------------------------*/
Build  : 11-c219200fdb8b
Exec   : foamRun
Date   : Apr 07 2024
Time   : 07:30:48
Host   : "assis"
PID    : 6245
I/O    : uncollated
Case   : /home/assis/OpenFOAM/assis-11/run/DOC
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster (fileModificationSkew 10)
allowSystemOperations : Allowing user-supplied system call operations

// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time

--> FOAM Warning : 
    From function void* Foam::dlOpen(const Foam::fileName&, bool)
    in file POSIX.C at line 1247
    dlopen error : /opt/openfoam11/platforms/linux64GccDPInt32Opt/lib/libphaseSystem.so: undefined symbol: _ZTIN4Foam35interfaceSaturationTemperatureModelE
--> FOAM Warning : 
    From function bool Foam::dlLibraryTable::open(const Foam::fileName&, bool)
    in file db/dynamicLibrary/dlLibraryTable/dlLibraryTable.C at line 106
    could not load "libphaseMomentumTransportModel.so"
Create mesh for time = 0

Selecting solver multiphaseEuler
Selecting phaseSystem basicMultiphaseSystem
No MRF models present

Selecting phaseModel for air: purePhaseModel
Selecting diameterModel for phase air: constant
Selecting thermodynamics package 
{
    type            heRhoThermo;
    mixture         pureMixture;
    transport       const;
    thermo          hConst;
    equationOfState perfectGas;
    specie          specie;
    energy          sensibleInternalEnergy;
}

Calculating face flux field phi.air
Selecting turbulence model type laminar
Selecting laminar stress model Stokes
Selecting thermophysical transport type laminar
Selecting default laminar thermophysical transport model unityLewisFourier
Selecting phaseModel for water: purePhaseModel
Selecting diameterModel for phase water: constant
Selecting thermodynamics package 
{
    type            heRhoThermo;
    mixture         pureMixture;
    transport       const;
    thermo          hConst;
    equationOfState rhoConst;
    specie          specie;
    energy          sensibleInternalEnergy;
}

Calculating face flux field phi.water
Selecting turbulence model type LES
Selecting LES turbulence model multiphaseNicenoKE


--> FOAM FATAL ERROR: 
Unknown LESModel type multiphaseNicenoKE

Valid LESModel types:

5
(
NicenoKEqn
Smagorinsky
SmagorinskyZhang
continuousGasKEqn
kEqn
)


    From function static Foam::autoPtr<Foam::LESModel<BasicMomentumTransportModel> > Foam::LESModel<BasicMomentumTransportModel>::New(const alphaField&, const rhoField&, const volVectorField&, const surfaceScalarField&, const surfaceScalarField&, const Foam::viscosity&) [with BasicMomentumTransportModel = Foam::phaseCompressibleMomentumTransportModel; Foam::LESModel<BasicMomentumTransportModel>::alphaField = Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>; Foam::LESModel<BasicMomentumTransportModel>::rhoField = Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>; Foam::volVectorField = Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>; Foam::surfaceScalarField = Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>]
    in file ../momentumTransportModels/lnInclude/LESModel.C at line 176.

 FOAM exiting

controlDict:

Code:

/*--------------------------------*- C++ -*----------------------------------*\
  =========                 |
  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
   \\    /   O peration     | Website:  https://openfoam.org
    \\  /    A nd           | Version:  11
     \\/     M anipulation  |
\*---------------------------------------------------------------------------*/
FoamFile
{
    format      ascii;
    class       dictionary;
    location    "system";
    object      controlDict;
}
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

libs (
        "libphaseMomentumTransportModel.so"
     );     
     
application       foamRun;

 solver            multiphaseEuler;

Code:

$ wmake
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file phaseMomentumTransportModel.C
g++ -std=c++14 -m64 -DLIB_NAME=libphaseMomentumTransportModel.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3  -DNoRepository -ftemplate-depth-100 -I/opt/openfoam11/src/physicalProperties/lnInclude -I/opt/openfoam11/src/finiteVolume/lnInclude -I/opt/openfoam11/src/meshTools/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/phaseCompressible/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/momentumTransportModels/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/compressible/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/phaseSystems/lnInclude -I/opt/openfoam11/src/twoPhaseModels/compressibleTwoPhases/lnInclude -I/opt/openfoam11/src/twoPhaseModels/twoPhaseMixture/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/interfacialModels/lnInclude -I/opt/openfoam11/src/sampling/lnInclude -I/opt/openfoam11/src/thermophysicalModels/basic/lnInclude -IlnInclude -I. -I/opt/openfoam11/src/OpenFOAM/lnInclude -I/opt/openfoam11/src/OSspecific/POSIX/lnInclude   -fPIC -c phaseMomentumTransportModel.C -o Make/linux64GccDPInt32Opt/phaseMomentumTransportModel.o
g++ -std=c++14 -m64 -DLIB_NAME=libphaseMomentumTransportModel.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3  -DNoRepository -ftemplate-depth-100 -I/opt/openfoam11/src/physicalProperties/lnInclude -I/opt/openfoam11/src/finiteVolume/lnInclude -I/opt/openfoam11/src/meshTools/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/phaseCompressible/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/momentumTransportModels/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/compressible/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/phaseSystems/lnInclude -I/opt/openfoam11/src/twoPhaseModels/compressibleTwoPhases/lnInclude -I/opt/openfoam11/src/twoPhaseModels/twoPhaseMixture/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/interfacialModels/lnInclude -I/opt/openfoam11/src/sampling/lnInclude -I/opt/openfoam11/src/thermophysicalModels/basic/lnInclude -IlnInclude -I. -I/opt/openfoam11/src/OpenFOAM/lnInclude -I/opt/openfoam11/src/OSspecific/POSIX/lnInclude   -fPIC -fuse-ld=bfd -shared -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/phaseMomentumTransportModel.o -L/opt/openfoam11/platforms/linux64GccDPInt32Opt/lib \
    -lphysicalProperties -lfiniteVolume -lmeshTools -lmomentumTransportModels -lphaseSystem -lsampling  -o /home/assis/OpenFOAM/assis-11/platforms/linux64GccDPInt32Opt/lib/libphaseMomentumTransportModel.so

gu1 · April 9, 2024, 10:17

Can someone help me? I couldn't evolve alone.

Tobermory · April 9, 2024, 11:42

Well Guilherme, the error message is saying that it cannot find the LES model multiphaseNicenoKE; it gives you the list of available models in the list after the error message:

Quote:

Unknown LESModel type multiphaseNicenoKE

Valid LESModel types:

5
(
NicenoKEqn
Smagorinsky
SmagorinskyZhang
continuousGasKEqn
kEqn
)

So, assuming that models NicenoKEqn and multiphaseNicenoKE are your own user models, then I guess the real question is why is your multiphaseNicenoKE model not being recognised? Did it compile properly? I'd start there.

amirhosseintaran · April 10, 2024, 06:44

Hello,

Can you go to your $FOAM_USER_LIBBIN and confirm that your libphaseMomentumTransportModel.so is there or not?

Also, which version of OpenFOAM are you using?

Bests,
Amirhossein.

gu1 · April 12, 2024, 13:00

Quote:

Originally Posted by Tobermory

Did it compile properly? I'd start there.

Exactly,
That's the question I can't answer. I put the compilation log in the previous message. For me it was a success. I don't understand what I could have done wrong.

Code:

$ wmake
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file phaseMomentumTransportModel.C
g++ -std=c++14 -m64 -DLIB_NAME=libphaseMomentumTransportModel.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3  -DNoRepository -ftemplate-depth-100 -I/opt/openfoam11/src/physicalProperties/lnInclude -I/opt/openfoam11/src/finiteVolume/lnInclude -I/opt/openfoam11/src/meshTools/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/phaseCompressible/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/momentumTransportModels/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/compressible/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/phaseSystems/lnInclude -I/opt/openfoam11/src/twoPhaseModels/compressibleTwoPhases/lnInclude -I/opt/openfoam11/src/twoPhaseModels/twoPhaseMixture/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/interfacialModels/lnInclude -I/opt/openfoam11/src/sampling/lnInclude -I/opt/openfoam11/src/thermophysicalModels/basic/lnInclude -IlnInclude -I. -I/opt/openfoam11/src/OpenFOAM/lnInclude -I/opt/openfoam11/src/OSspecific/POSIX/lnInclude   -fPIC -c phaseMomentumTransportModel.C -o Make/linux64GccDPInt32Opt/phaseMomentumTransportModel.o
g++ -std=c++14 -m64 -DLIB_NAME=libphaseMomentumTransportModel.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3  -DNoRepository -ftemplate-depth-100 -I/opt/openfoam11/src/physicalProperties/lnInclude -I/opt/openfoam11/src/finiteVolume/lnInclude -I/opt/openfoam11/src/meshTools/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/phaseCompressible/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/momentumTransportModels/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/compressible/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/phaseSystems/lnInclude -I/opt/openfoam11/src/twoPhaseModels/compressibleTwoPhases/lnInclude -I/opt/openfoam11/src/twoPhaseModels/twoPhaseMixture/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/interfacialModels/lnInclude -I/opt/openfoam11/src/sampling/lnInclude -I/opt/openfoam11/src/thermophysicalModels/basic/lnInclude -IlnInclude -I. -I/opt/openfoam11/src/OpenFOAM/lnInclude -I/opt/openfoam11/src/OSspecific/POSIX/lnInclude   -fPIC -fuse-ld=bfd -shared -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/phaseMomentumTransportModel.o -L/opt/openfoam11/platforms/linux64GccDPInt32Opt/lib \
    -lphysicalProperties -lfiniteVolume -lmeshTools -lmomentumTransportModels -lphaseSystem -lsampling  -o /home/assis/OpenFOAM/assis-11/platforms/linux64GccDPInt32Opt/lib/libphaseMomentumTransportModel.so

gu1 · April 12, 2024, 13:01

Quote:

Originally Posted by amirhosseintaran

Hello,

Can you go to your $FOAM_USER_LIBBIN and confirm that your libphaseMomentumTransportModel.so is there or not?

Also, which version of OpenFOAM are you using?

Bests,
Amirhossein.

Check, it's there.
I'm using OpenFOAM 11.

amirhosseintaran · April 12, 2024, 13:23

Do one thing, try to compile it in $FOAM_LIBBIN, and see whether it works by compiling there or not,

If it worked, it seems that the PATH to $FOAM_USER_LIBBIN is not defined properly.

gu1 · April 12, 2024, 18:22

Quote:

Originally Posted by amirhosseintaran

Do one thing, try to compile it in $FOAM_LIBBIN, and see whether it works by compiling there or not,

If it worked, it seems that the PATH to $FOAM_USER_LIBBIN is not defined properly.

I'll try and get back to you as quickly as I can.

gu1 · April 13, 2024, 06:35

Quote:

Originally Posted by amirhosseintaran

Do one thing, try to compile it in $FOAM_LIBBIN, and see whether it works by compiling there or not,

If it worked, it seems that the PATH to $FOAM_USER_LIBBIN is not defined properly.

For your knowledge:

Code:

assis@assis:~$ cd $FOAM_USER_LIBBIN
assis@assis:~/OpenFOAM/assis-11/platforms/linux64GccDPInt32Opt/lib$ ls
libphaseMomentumTransportModel.so

and...

file:

Code:

phaseMomentumTransportModel.C

LIB = $(FOAM_LIBBIN)/libphaseMomentumTransportModel

log:

Code:

$ wmake
wmakeLnInclude: linking include files to ./lnInclude
Making dependency list for source file phaseMomentumTransportModel.C
g++ -std=c++14 -m64 -DLIB_NAME=libphaseMomentumTransportModel.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3  -DNoRepository -ftemplate-depth-100 -I/opt/openfoam11/src/physicalProperties/lnInclude -I/opt/openfoam11/src/finiteVolume/lnInclude -I/opt/openfoam11/src/meshTools/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/phaseCompressible/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/momentumTransportModels/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/compressible/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/phaseSystems/lnInclude -I/opt/openfoam11/src/twoPhaseModels/compressibleTwoPhases/lnInclude -I/opt/openfoam11/src/twoPhaseModels/twoPhaseMixture/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/interfacialModels/lnInclude -I/opt/openfoam11/src/sampling/lnInclude -I/opt/openfoam11/src/thermophysicalModels/basic/lnInclude -IlnInclude -I. -I/opt/openfoam11/src/OpenFOAM/lnInclude -I/opt/openfoam11/src/OSspecific/POSIX/lnInclude   -fPIC -c phaseMomentumTransportModel.C -o Make/linux64GccDPInt32Opt/phaseMomentumTransportModel.o
g++ -std=c++14 -m64 -DLIB_NAME=libphaseMomentumTransportModel.so -Dlinux64 -DWM_ARCH_OPTION=64 -DWM_DP -DWM_LABEL_SIZE=32 -Wall -Wextra -Wold-style-cast -Wnon-virtual-dtor -Wno-unused-parameter -Wno-invalid-offsetof -Wno-attributes -O3  -DNoRepository -ftemplate-depth-100 -I/opt/openfoam11/src/physicalProperties/lnInclude -I/opt/openfoam11/src/finiteVolume/lnInclude -I/opt/openfoam11/src/meshTools/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/phaseCompressible/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/momentumTransportModels/lnInclude -I/opt/openfoam11/src/MomentumTransportModels/compressible/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/phaseSystems/lnInclude -I/opt/openfoam11/src/twoPhaseModels/compressibleTwoPhases/lnInclude -I/opt/openfoam11/src/twoPhaseModels/twoPhaseMixture/lnInclude -I/opt/openfoam11/src/../applications/modules/multiphaseEuler/interfacialModels/lnInclude -I/opt/openfoam11/src/sampling/lnInclude -I/opt/openfoam11/src/thermophysicalModels/basic/lnInclude -IlnInclude -I. -I/opt/openfoam11/src/OpenFOAM/lnInclude -I/opt/openfoam11/src/OSspecific/POSIX/lnInclude   -fPIC -fuse-ld=bfd -shared -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPInt32Opt/phaseMomentumTransportModel.o -L/opt/openfoam11/platforms/linux64GccDPInt32Opt/lib \
    -lphysicalProperties -lfiniteVolume -lmeshTools -lmomentumTransportModels -lphaseSystem -lsampling  -o /opt/openfoam11/platforms/linux64GccDPInt32Opt/lib/libphaseMomentumTransportModel.so
/usr/bin/ld.bfd: não foi possível abrir o arquivo de saída /opt/openfoam11/platforms/linux64GccDPInt32Opt/lib/libphaseMomentumTransportModel.so: Permissão negada
collect2: error: ld returned 1 exit status
 make: *** [/opt/openfoam11/wmake/makefiles/general:181: /opt/openfoam11/platforms/linux64GccDPInt32Opt/lib/libphaseMomentumTransportModel.so] Erro 1

ERRO

How can I make sure OF11 is looking at the correct folder ($FOAM_USER_LIBBIN)? Although that doesn't make ANY sense. It locates the folder correctly.

gu1 · April 13, 2024, 09:38

Code:

--> FOAM FATAL ERROR: 
Unknown LESModel type multiphaseNicenoKE

Valid LESModel types:

5
(
NicenoKEqn
Smagorinsky
SmagorinskyZhang
continuousGasKEqn
kEqn
)


    From function static Foam::autoPtr<Foam::LESModel<BasicMomentumTransportModel> > Foam::LESModel<BasicMomentumTransportModel>::New(const alphaField&, const rhoField&, const volVectorField&, const surfaceScalarField&, const surfaceScalarField&, const Foam::viscosity&) [with BasicMomentumTransportModel = Foam::phaseCompressibleMomentumTransportModel; Foam::LESModel<BasicMomentumTransportModel>::alphaField = Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>; Foam::LESModel<BasicMomentumTransportModel>::rhoField = Foam::GeometricField<double, Foam::fvPatchField, Foam::volMesh>; Foam::volVectorField = Foam::GeometricField<Foam::Vector<double>, Foam::fvPatchField, Foam::volMesh>; Foam::surfaceScalarField = Foam::GeometricField<double, Foam::fvsPatchField, Foam::surfaceMesh>]
    in file ../momentumTransportModels/lnInclude/LESModel.C at line 176.

 FOAM exiting

Something that is bothering me is the fact that kEqn was not supposed to be cited. It is not a multiphase model...

and, OF mentions the error in line 176, but honestly I didn't see anything...

Tobermory · April 20, 2024, 11:29

Don't worry about the line 176 - the code exits via the call to FatalErrorInFunction in the following lines:

Code:

     if (cstrIter == dictionaryConstructorTablePtr_->end())
     {
         FatalErrorInFunction
             << "Unknown LESModel type "
             << modelType << nl << nl
             << "Valid LESModel types:" << endl
             << dictionaryConstructorTablePtr_->sortedToc()
             << exit(FatalError);
     }

where line 176 is the one with the call to the FatalErrorInFuntion. So basically, the code cannot find your chosen LES model in the list of available models, hits end of table and calls the FatalErrorInFuntion, which exits cleanly with the warning message. So all fine there.

Your problem, as I understand it, is that your LES model multiphaseNicenoKE is not appearing in the list of available models, but kEqn is. So here's a thought - try remove your multiphaseNicenoKE model from the library and recompile, and now what is the list of available models? Does kEqn disappear? If so, then we are getting closer - your model has compiled, but is registered with the wrong name; try then checking your coding to see if you have a simple boo-boo (like forgetting to update the Typename to multiphaseNicenoKE).

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April 9, 2024, 10:17		#2
gu1 Senior Member Guilherme Join Date: Apr 2017 Posts: 225 Rep Power: 10	Can someone help me? I couldn't evolve alone.

April 10, 2024, 06:44		#4
amirhosseintaran Member Amirhossein Taran Join Date: Sep 2016 Location: Dublin, Ireland Posts: 50 Rep Power: 9	Hello, Can you go to your *$FOAM_USER_LIBBIN* and confirm that your libphaseMomentumTransportModel.so is there or not? Also, which version of OpenFOAM are you using? Bests, Amirhossein.

April 12, 2024, 13:23		#7
amirhosseintaran Member Amirhossein Taran Join Date: Sep 2016 Location: Dublin, Ireland Posts: 50 Rep Power: 9	Do one thing, try to compile it in $FOAM_LIBBIN, and see whether it works by compiling there or not, If it worked, it seems that the PATH to $FOAM_USER_LIBBIN is not defined properly.

April 20, 2024, 11:29		#11
Tobermory Senior Member Join Date: Apr 2020 Location: UK Posts: 668 Rep Power: 14	Don't worry about the line 176 - the code exits via the call to FatalErrorInFunction in the following lines: Code: if (cstrIter == dictionaryConstructorTablePtr_->end()) { FatalErrorInFunction << "Unknown LESModel type " << modelType << nl << nl << "Valid LESModel types:" << endl << dictionaryConstructorTablePtr_->sortedToc() << exit(FatalError); } where line 176 is the one with the call to the FatalErrorInFuntion. So basically, the code cannot find your chosen LES model in the list of available models, hits end of table and calls the FatalErrorInFuntion, which exits cleanly with the warning message. So all fine there. Your problem, as I understand it, is that your LES model multiphaseNicenoKE is not appearing in the list of available models, but kEqn is. So here's a thought - try remove your multiphaseNicenoKE model from the library and recompile, and now what is the list of available models? Does kEqn disappear? If so, then we are getting closer - your model has compiled, but is registered with the wrong name; try then checking your coding to see if you have a simple boo-boo (like forgetting to update the Typename to multiphaseNicenoKE).